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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_02790 and AO356_02795 are separated by 107 nucleotides
AO356_02795 and AO356_02800 are separated by 91 nucleotides
AO356_02800 and AO356_02805 are separated by 2 nucleotides
AO356_02805 and AO356_02810 are separated by 64 nucleotides
AO356_02790: AO356_02790 - porin, at 615,347 to 616,381
_02790
AO356_02795: AO356_02795 - RNA polymerase subunit sigma, at 616,489 to 617,079
_02795
AO356_02800: AO356_02800 - transporter, at 617,171 to 617,995
_02800
AO356_02805: AO356_02805 - CrfX protein, at 617,998 to 618,243
_02805
AO356_02810: AO356_02810 - CmaX protein, at 618,308 to 619,303
_02810
Group
Condition
AO356
_02790
AO356
_02795
AO356
_02800
AO356
_02805
AO356
_02810
stress
Benzalkonium Chloride 0.016 mg/ml
N.D.
N.D.
-3.1
N.D.
-0.6
stress
Benzalkonium Chloride 0.008 mg/ml
N.D.
N.D.
-2.9
N.D.
-0.3
anaerobic
Nitrate reduction with yeast extract
N.D.
N.D.
-2.5
N.D.
-0.7
motility
outer cut, LB soft agar motility assay
N.D.
N.D.
-2.8
N.D.
-0.2
stress
Benzethonium chloride 0.025 mM
N.D.
N.D.
-2.3
N.D.
-0.6
stress
Cephalothin 2 mg/ml
N.D.
N.D.
-2.6
N.D.
-0.0
temperature
LB 10C
N.D.
N.D.
-2.4
N.D.
-0.2
stress
Spectinomycin 0.025 mg/ml
N.D.
N.D.
-2.0
N.D.
-0.3
survival
4C survival; 360 hrs
N.D.
N.D.
-1.8
N.D.
-0.3
stress
Cholin acetate 40 mM
N.D.
N.D.
-2.1
N.D.
+0.0
carbon source
acetate (C)
N.D.
N.D.
-1.4
N.D.
-0.7
carbon source
L-Proline (C)
N.D.
N.D.
-2.0
N.D.
-0.0
stress
Aluminum chloride 5 mM
N.D.
N.D.
-1.4
N.D.
-0.6
carbon source
L-Histidine (C)
N.D.
N.D.
-1.7
N.D.
-0.3
stress
syringaldehyde 10 mM
N.D.
N.D.
-1.3
N.D.
-0.7
motility
outer cut, LB soft agar motility assay
N.D.
N.D.
-2.3
N.D.
+0.4
carbon source
Carbon source Sucrose 5 mM
N.D.
N.D.
-1.5
N.D.
-0.3
temperature
LB 20C
N.D.
N.D.
-1.5
N.D.
-0.2
stress
Vanillin 1.25 mM
N.D.
N.D.
-1.7
N.D.
+0.0
carbon source
L-Proline (C)
N.D.
N.D.
-1.6
N.D.
-0.1
survival
4C survival; 1152 hrs
N.D.
N.D.
-1.7
N.D.
+0.1
carbon source
Carbon source Sucrose 10 mM
N.D.
N.D.
-1.5
N.D.
-0.1
temperature
LB 20C
N.D.
N.D.
-1.4
N.D.
-0.2
survival
4C survival; 24 hrs
N.D.
N.D.
-1.6
N.D.
-0.0
temperature
LB 30C
N.D.
N.D.
-1.6
N.D.
+0.1
stress
Paraquat dichloride 0.0625 mg/ml
N.D.
N.D.
-1.3
N.D.
-0.3
carbon source
L-Lysine (C)
N.D.
N.D.
-1.4
N.D.
-0.2
stress
Lomefloxacin 0.0005 mM
N.D.
N.D.
+0.4
N.D.
-1.2
stress
Nickel (II) chloride 0.625 mM
N.D.
N.D.
+1.5
N.D.
-0.2
stress
Choline chloride 500 mM
N.D.
N.D.
+1.5
N.D.
+1.4
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