Fitness for 5 genes in Pseudomonas fluorescens FW300-N2C3

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500 ntAO356_02710 and AO356_02715 overlap by 4 nucleotidesAO356_02715 and AO356_02720 overlap by 4 nucleotidesAO356_02720 and AO356_02725 overlap by 17 nucleotidesAO356_02725 and AO356_02730 are separated by 66 nucleotides AO356_02710: AO356_02710 - flagellar motor switch/type III secretory pathway protein, at 593,582 to 594,511 _02710 AO356_02715: AO356_02715 - type III secretion effector protein, at 594,508 to 595,377 _02715 AO356_02720: AO356_02720 - type III secretion protein, at 595,374 to 595,829 _02720 AO356_02725: AO356_02725 - ATP synthase, at 595,813 to 597,099 _02725 AO356_02730: AO356_02730 - type III secretion system protein InvA, at 597,166 to 599,217 _02730
Group Condition AO356_02710 AO356_02715 AO356_02720 AO356_02725 AO356_02730
stress Sisomicin 0.001 mg/ml -0.6 +0.4 -2.9 -0.0 -0.1
stress perchlorate 75 mM -0.0 -0.2 -1.4 -0.6 -0.1
nitrogen source Urea (N) +0.0 -0.4 -1.3 -0.4 +0.1
stress 1-ethyl-3-methylimidazolium chloride 200 mM +0.2 -0.2 -1.4 -0.2 -0.1
stress Chlorite 0.04 mM +0.2 +0.2 -2.0 -0.0 +0.1
stress acetate 40 mM -0.1 -0.5 -0.5 -0.1 -0.3
stress Choline chloride 500 mM -0.2 -0.4 -0.9 +0.1 +0.1
motility outer cut, LB soft agar motility assay +0.1 +0.2 -0.2 -0.9 -0.1
resistance 50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine -0.0 -0.2 -0.9 +0.3 +0.0
carbon source D,L-Lactate (C) -0.1 +0.3 -0.8 -0.1 +0.1
stress methylglyoxal 0.016 vol% -0.1 +0.2 -1.3 +0.6 +0.0
motility outer cut, LB soft agar motility assay +0.6 -0.0 -0.7 -0.4 +0.1
pH Minimal media pH8 +0.2 +0.1 -1.1 +0.3 +0.1
phage P5ss-5 phage 10-1 dilution SM calcl2 +0.1 +0.4 -0.1 -0.8 +0.2
stress nitrate 200 mM -0.0 +0.6 -0.6 +0.0 -0.1
motility outer cut, LB soft agar motility assay -0.5 -0.5 +1.2 -0.4 +0.1
carbon source pyruvate (C) +0.3 +0.3 -0.7 -0.2 +0.3
stress 1-ethyl-3-methylimidazolium lysine 10 mM -0.1 +0.5 -0.6 +0.3 +0.0
stress copper (II) chloride 2.5 mM +0.3 +0.5 +0.6 -1.2 -0.1
carbon source Carbon source D-Mannitol 10 mM +0.2 -0.4 -0.3 +0.5 +0.2
nitrogen source D-Serine (N) +0.2 +0.4 -0.5 +0.3 +0.1
stress KB-half, Pseudo5 supernatant +0.7 -0.6 -0.4 +0.9 -0.0
carbon source D,L-Lactate (C) +0.4 +0.6 -0.4 -0.1 +0.1
carbon source Carbon source D,L-Lactate 10 mM +0.1 -0.2 +0.6 +0.4 +0.2
pH Minimal media pH7 -0.2 +0.0 +1.1 +0.1 +0.1
pH Minimal media pH9 +0.1 +0.4 +0.4 +0.3 +0.2
stress Thallium(I) acetate 0.008 mg/ml +0.4 +0.5 +0.5 -0.1 +0.0
carbon source D-Galactose (C) +0.4 +0.4 +0.4 +0.1 +0.2
pH Minimal media pH6 +0.0 +0.1 +0.7 +0.6 +0.2
stress KB-half, Pseudo11 supernatant, 100 uM FeCl3 +1.0 -0.2 +0.7 +0.8 -0.4
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