Fitness for 5 genes in Pseudomonas fluorescens FW300-N2C3

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500 ntAO356_02630 and AO356_02635 overlap by 14 nucleotidesAO356_02635 and AO356_02640 overlap by 4 nucleotidesAO356_02640 and AO356_02645 are separated by 59 nucleotidesAO356_02645 and AO356_02650 are separated by 3 nucleotides AO356_02630: AO356_02630 - secretion system protein, at 580,548 to 581,114 _02630 AO356_02635: AO356_02635 - pathogenicity island 1 effector protein, at 581,101 to 581,823 _02635 AO356_02640: AO356_02640 - type III secretion system protein PrgJ, at 581,820 to 582,128 _02640 AO356_02645: AO356_02645 - protein MxiH, at 582,188 to 582,451 _02645 AO356_02650: AO356_02650 - type III secretion system protein PrgH, at 582,455 to 583,633 _02650
Group Condition AO356_02630 AO356_02635 AO356_02640 AO356_02645 AO356_02650
stress Cobalt chloride 0.08 mM -0.6 -1.3 -0.2 -0.4 -0.1
carbon source Carbon source Sucrose 10 mM -0.5 +0.3 -1.1 -0.5 -0.3
stress 1-ethyl-3-methylimidazolium acetate 10 mM -0.1 -0.0 -1.1 -0.6 -0.1
carbon source L-Lysine (C) -0.9 +0.0 -0.5 -0.1 -0.2
stress Cholin acetate 20 mM -0.4 -0.2 -0.5 -0.6 +0.2
stress Thallium(I) acetate 0.008 mg/ml +0.1 +0.1 -1.3 -0.4 -0.1
phage P5ss-5 phage 10-1 dilution SM calcl2 +0.3 -0.5 +0.3 -0.9 -0.6
motility outer cut, LB soft agar motility assay -0.5 -0.7 -0.1 -0.4 +0.4
stress acetate 40 mM -0.1 +0.3 -1.0 -0.5 -0.0
carbon source Carbon source D-Mannitol 10 mM +0.2 +0.1 -1.3 +0.2 -0.1
stress Sisomicin 0.001 mg/ml -1.0 +0.4 +0.9 -0.6 -0.7
stress Nickel (II) chloride 0.625 mM +0.4 -0.3 -0.6 -0.3 -0.0
motility outer cut, LB soft agar motility assay -0.7 -0.1 +0.4 -0.9 +0.4
survival 4C survival; 192 hrs -0.5 -0.4 +0.6 -0.5 +0.2
stress 1-ethyl-3-methylimidazolium chloride 200 mM -0.1 -0.1 +0.7 -0.9 -0.0
stress copper (II) chloride 2.5 mM +0.4 +0.3 -0.3 -0.4 -0.3
stress nitrate 200 mM -0.1 +0.5 +0.4 -0.8 -0.2
stress perchlorate 75 mM -0.7 +0.7 -0.0 -0.5 +0.3
stress Spectinomycin 0.0125 mg/ml -0.6 +0.1 +0.7 -0.2 -0.0
stress Chlorite 0.04 mM +0.5 +0.5 -1.0 +0.3 -0.2
anaerobic Nitrate reduction with yeast extract -0.4 +0.9 -0.1 +0.1 +0.3
stress methylglyoxal 0.016 vol% +0.7 +0.3 +0.5 -0.3 -0.2
pH Minimal media pH8 -0.4 +0.5 +0.6 +0.2 +0.1
motility outer cut, LB soft agar motility assay -0.4 +0.2 +0.7 +0.3 +0.2
stress nitrite 10 mM -0.1 -0.0 +1.3 -0.4 +0.4
stress Nalidixic 0.004 mg/ml +0.3 +0.6 +0.9 -0.1 +0.2
stress Fusidic 0.1 mg/ml +0.0 +0.3 +1.4 +0.1 +0.1
stress KB-half, Pseudo11 supernatant, 100 uM FeCl3 +1.2 +0.7 +0.8 -0.2 -0.0
motility outer cut, LB soft agar motility assay +0.3 +0.9 +1.3 +0.2 -0.1
stress KB-half, Pseudo5 supernatant +1.6 +1.9 +0.8 -0.5 +0.5
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