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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_02565 and AO356_02570 are separated by 124 nucleotides
AO356_02570 and AO356_02575 are separated by 19 nucleotides
AO356_02575 and AO356_02580 are separated by 122 nucleotides
AO356_02580 and AO356_02585 are separated by 355 nucleotides
AO356_02565: AO356_02565 - Xanthine dehydrogenase (EC 1.17.1.4)
(from data)
, at 561,481 to 563,880
_02565
AO356_02570: AO356_02570 - molybdenum cofactor sulfurylase, at 564,005 to 564,847
_02570
AO356_02575: AO356_02575 - guanine deaminase, at 564,867 to 566,171
_02575
AO356_02580: AO356_02580 - GntR family transcriptional regulator, at 566,294 to 567,058
_02580
AO356_02585: AO356_02585 - hypothetical protein, at 567,414 to 568,604
_02585
Group
Condition
AO356
_02565
AO356
_02570
AO356
_02575
AO356
_02580
AO356
_02585
carbon source
D-Glucosamine Hydrochloride (C)
-0.0
-0.1
+0.0
-3.9
+0.1
nitrogen source
Inosine (N)
-1.5
-1.3
+0.0
-0.8
+0.1
carbon source
D-Xylose (C)
+0.1
-0.3
+0.1
-2.8
-0.1
pH
Minimal media pH9
+0.0
+0.0
+0.1
-2.9
-0.1
carbon source
L-Histidine (C)
-0.2
-0.2
+0.1
-2.6
+0.0
carbon source
NAG (C)
+0.0
+0.0
-0.1
-2.7
-0.0
carbon source
D-Lactate (C)
+0.0
+0.2
+0.0
-2.5
-0.1
carbon source
L-Histidine (C)
-0.2
+0.1
-0.1
-2.0
-0.1
carbon source
Carbon source D-Mannitol 5 mM
+0.0
-0.0
+0.2
-2.1
-0.1
carbon source
Cytidine (C)
-0.0
-0.2
-0.0
-1.5
-0.1
carbon source
Uridine (C)
+0.0
-0.1
+0.1
-1.7
-0.1
carbon source
Inosine (C)
-1.1
-0.9
-0.0
+0.2
-0.0
motility
outer cut, LB soft agar motility assay
-0.2
-0.4
-0.1
-1.0
-0.1
carbon source
D-Xylose (C)
-0.0
-0.1
-0.0
-1.7
+0.0
carbon source
D-Lactate (C)
+0.0
+0.1
+0.1
-1.9
-0.0
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
-0.1
-0.0
-0.1
-1.6
+0.1
nitrogen source
Adenine (N)
-0.8
-0.9
+0.2
-0.2
+0.1
resistance
50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
-0.1
-0.0
-0.0
-1.5
+0.1
stress
Cholin acetate 40 mM
-0.2
+0.1
-0.1
-1.4
+0.0
resistance
10% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
-0.1
+0.0
+0.0
-1.6
+0.2
carbon source
L-Proline (C)
+0.0
-0.0
+0.1
-1.4
-0.1
carbon source
Carbon source D-Mannitol 2.5 mM
+0.1
+0.2
+0.0
-1.6
-0.0
carbon source
D-Fructose (C)
+0.1
-0.0
+0.1
-1.5
+0.0
carbon source
L-Arginine (C)
-0.0
+0.1
+0.1
-1.5
+0.1
resistance
10% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
-0.0
+0.1
+0.1
-1.4
+0.1
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.0
+0.4
-0.1
-1.5
-0.0
stress
Rifampicin 0.0024 mg/ml
+0.1
+0.2
-0.0
+1.2
+0.2
stress
Benzalkonium Chloride 0.016 mg/ml
+0.1
-0.4
-0.1
+2.5
-0.0
carbon source
D-Gluconic Acid (C)
-0.0
-0.1
+0.0
+2.1
+0.1
carbon source
D-Gluconic Acid (C)
-0.0
+0.0
+0.0
+2.2
+0.2
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