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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_02480 and AO356_02485 are separated by 94 nucleotides
AO356_02485 and AO356_02490 are separated by 76 nucleotides
AO356_02490 and AO356_02495 are separated by 126 nucleotides
AO356_02495 and AO356_02500 are separated by 66 nucleotides
AO356_02480: AO356_02480 - coproporphyrinogen III oxidase, at 538,668 to 540,050
_02480
AO356_02485: AO356_02485 - transcriptional regulator, at 540,145 to 540,879
_02485
AO356_02490: AO356_02490 - adenine phosphoribosyltransferase, at 540,956 to 541,504
_02490
AO356_02495: AO356_02495 - recombination protein RecR, at 541,631 to 542,233
_02495
AO356_02500: AO356_02500 - 2-alkenal reductase, at 542,300 to 543,334
_02500
Group
Condition
AO356
_02480
AO356
_02485
AO356
_02490
AO356
_02495
AO356
_02500
anaerobic
Nitrate reduction with yeast extract
+0.3
-5.5
+1.1
-0.1
+0.2
carbon source
Carbon source Sucrose 5 mM
+0.2
-3.3
+0.3
-0.9
-0.1
survival
4C survival; 24 hrs
-1.0
-2.5
-0.2
-0.2
+0.2
stress
Cisplatin 0.0032 mg/ml
+0.5
+0.6
+0.1
-4.7
+0.1
survival
4C survival; 360 hrs
-0.6
-1.6
+0.2
-1.1
+0.1
stress
acetate 40 mM
-0.7
-1.6
+0.3
-0.7
-0.1
stress
Sisomicin 0.001 mg/ml
-0.3
-1.4
+0.1
-1.0
-0.2
survival
4C survival; 1152 hrs
-0.9
-0.7
+0.1
-1.0
+0.1
stress
Cisplatin 0.0032 mg/ml
+0.1
+0.5
-0.2
-2.8
-0.1
carbon source
L-Glutamic (C)
-0.6
-1.2
+0.0
-0.5
-0.0
stress
copper (II) chloride 2.5 mM
-1.5
-1.4
+0.1
+0.3
+0.3
carbon source
Carbon source D-Mannitol 10 mM
-0.0
-1.2
-0.6
-0.5
-0.0
carbon source
L-Proline (C)
-0.5
-1.0
-0.0
-0.8
-0.0
pH
Minimal media pH8
-0.3
-1.1
-0.6
-0.4
+0.1
stress
nitrate 200 mM
+0.0
-1.8
+0.1
-0.6
-0.0
carbon source
L-Glutamic (C)
-0.5
-1.3
-0.3
-0.1
-0.2
stress
methylglyoxal 0.016 vol%
-0.6
+0.2
+0.4
-2.4
+0.2
stress
Cholin acetate 40 mM
-0.5
-1.5
+0.0
-0.1
-0.1
carbon source
acetate (C)
-0.6
-1.2
+0.3
-0.5
+0.0
stress
D-Cycloserine 0.1 mg/ml
+0.2
-0.5
+0.1
-1.6
-0.0
stress
nitrite 10 mM
+0.4
-1.1
-0.3
-0.8
-0.0
carbon source
L-Histidine (C)
-0.3
-0.7
+0.3
-1.1
-0.1
motility
outer cut, LB soft agar motility assay
-0.5
-0.8
+0.4
-1.2
+0.4
carbon source
Carbon source D-Glucose 10 mM
+0.1
-1.3
+0.3
-0.7
+0.0
stress
Cholin acetate 20 mM
-0.3
-1.5
+0.4
-0.2
+0.1
carbon source
acetate (C)
-0.2
-1.5
+0.5
-0.4
+0.1
phage
P5ss-5 phage 10-1 dilution SM calcl2
-1.2
-0.2
+0.5
-0.7
+0.2
stress
Lomefloxacin 0.0005 mM
-0.2
+1.1
-0.3
-1.6
+0.0
survival
4C survival; 192 hrs
-1.1
+1.8
+0.1
-0.5
+0.1
stress
Cobalt chloride 0.08 mM
+0.8
+0.7
-0.3
-0.5
+0.0
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