Fitness for 5 genes in Pseudomonas fluorescens FW300-N2C3

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500 ntAO356_02230 and AO356_02235 overlap by 8 nucleotidesAO356_02235 and AO356_02240 are separated by 94 nucleotidesAO356_02240 and AO356_02245 overlap by 4 nucleotidesAO356_02245 and AO356_02250 are separated by 42 nucleotides AO356_02230: AO356_02230 - ABC transporter, at 478,495 to 479,193 _02230 AO356_02235: AO356_02235 - cell division protein FtsX, at 479,186 to 480,436 _02235 AO356_02240: AO356_02240 - pilus assembly protein PilZ, at 480,531 to 481,127 _02240 AO356_02245: AO356_02245 - glycerophosphodiester phosphodiesterase, at 481,124 to 481,846 _02245 AO356_02250: AO356_02250 - pyridine nucleotide-disulfide oxidoreductase, at 481,889 to 483,283 _02250
Group Condition AO356_02230 AO356_02235 AO356_02240 AO356_02245 AO356_02250
carbon source acetate (C) N.D. N.D. -0.0 -0.9 -3.7
stress acetate 40 mM N.D. N.D. -0.1 -0.0 -4.4
stress Cholin acetate 20 mM N.D. N.D. -0.3 -0.0 -4.2
stress 1-ethyl-3-methylimidazolium acetate 5 mM N.D. N.D. +0.2 -0.0 -4.6
carbon source acetate (C) N.D. N.D. -0.2 -0.6 -3.6
stress 1-ethyl-3-methylimidazolium acetate 10 mM N.D. N.D. -0.0 -0.0 -4.2
stress nitrite 10 mM N.D. N.D. +0.2 -0.2 -4.1
stress Cephalothin 2 mg/ml N.D. N.D. -0.6 +0.1 -3.5
stress 1-ethyl-3-methylimidazolium acetate 20 mM N.D. N.D. -0.0 +0.0 -3.8
stress Cholin acetate 40 mM N.D. N.D. -0.0 +0.1 -3.9
stress syringaldehyde 10 mM N.D. N.D. +0.3 +0.0 -3.8
stress Vanillin 2.5 mM N.D. N.D. +0.0 -0.1 -3.3
carbon source L-Lysine (C) N.D. N.D. -0.6 +0.2 -2.0
motility outer cut, LB soft agar motility assay N.D. N.D. -0.7 -0.2 -1.4
survival 4C survival; 1152 hrs N.D. N.D. -0.2 -0.0 -2.1
anaerobic Nitrate reduction with yeast extract N.D. N.D. +0.4 +0.2 -2.6
stress 1-ethyl-3-methylimidazolium lysine 10 mM N.D. N.D. +0.0 -0.2 -1.9
stress copper (II) chloride 2.5 mM N.D. N.D. +0.3 -0.1 -2.3
motility outer cut, LB soft agar motility assay N.D. N.D. -2.2 +0.4 -0.2
carbon source L-Lysine (C) N.D. N.D. +0.2 -0.4 -1.8
stress Chlorite 0.08 mM N.D. N.D. +0.2 -0.1 -2.1
stress syringaldehyde 5 mM N.D. N.D. +0.4 +0.2 -2.4
carbon source Carbon source D-Mannitol 2.5 mM N.D. N.D. -0.5 -0.1 -1.3
survival 4C survival; 672 hrs N.D. N.D. -0.2 -0.1 -1.5
carbon source L-Asparagine (C) N.D. N.D. -0.3 -0.1 -1.4
stress D-Cycloserine 0.1 mg/ml N.D. N.D. -0.5 +0.2 -1.2
nitrogen source Carnitine Hydrochloride (N) N.D. N.D. +0.4 -0.3 -1.6
stress Vanillin 1.25 mM N.D. N.D. +0.3 +0.1 -1.7
carbon source L-Leucine (C) N.D. N.D. +0.4 -0.0 -1.6
phage P5ss-5 phage 10-1 dilution SM calcl2 N.D. N.D. -1.0 +0.4 +0.6
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