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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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5
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500 nt
AO356_01915 and AO356_01925 are separated by 955 nucleotides
AO356_01925 and AO356_01930 are separated by 15 nucleotides
AO356_01930 and AO356_01935 overlap by 10 nucleotides
AO356_01935 and AO356_01940 are separated by 254 nucleotides
AO356_01915: AO356_01915 - hypothetical protein, at 426,312 to 426,587
_01915
AO356_01925: AO356_01925 - hypothetical protein, at 427,543 to 427,905
_01925
AO356_01930: AO356_01930 - hypothetical protein, at 427,921 to 428,799
_01930
AO356_01935: AO356_01935 - biotin synthase, at 428,790 to 430,010
_01935
AO356_01940: AO356_01940 - hypothetical protein, at 430,265 to 430,588
_01940
Group
Condition
AO356
_01915
AO356
_01925
AO356
_01930
AO356
_01935
AO356
_01940
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.1
-0.2
-0.1
+0.1
-3.2
carbon source
L-Isoleucine (C)
-1.4
-0.2
+0.3
-0.0
-0.1
motility
outer cut, LB soft agar motility assay
+1.1
-0.6
+0.5
-0.0
-2.2
stress
perchlorate 75 mM
-0.8
+0.3
-0.2
+0.0
-0.6
nitrogen source
D-Alanine (N)
-1.3
-0.3
+0.1
-0.0
+0.3
stress
1-ethyl-3-methylimidazolium acetate 5 mM
-1.7
+0.1
+0.2
+0.1
+0.5
carbon source
Carbon source Sucrose 2.5 mM
-1.0
+0.3
-0.4
+0.0
+0.8
survival
4C survival; 360 hrs
+0.7
-0.5
+0.5
-0.0
-0.9
motility
outer cut, LB soft agar motility assay
+1.5
-1.2
+0.6
+0.1
-1.3
carbon source
L-Leucine (C)
-0.9
+0.2
+0.1
-0.1
+0.6
stress
Cephalothin 2 mg/ml
+0.6
+0.1
+0.3
-0.0
-1.0
stress
methylglyoxal 0.016 vol%
+0.9
-0.5
+0.1
-0.1
-0.4
lb
LB
+0.8
-0.4
+0.2
-0.1
-0.5
stress
Lomefloxacin 0.0005 mM
+1.0
-0.0
+0.2
+0.1
-0.8
stress
Cisplatin 0.0032 mg/ml
+0.6
+0.3
-0.3
-0.2
+0.5
carbon source
Carbon source D-Mannitol 10 mM
-0.2
+0.2
-0.3
-0.1
+1.3
carbon source
L-Lysine (C)
+1.0
+0.4
-0.4
+0.1
+0.1
motility
outer cut, LB soft agar motility assay
+1.3
+0.2
+0.3
-0.1
-0.3
resistance
10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
+0.8
-0.5
+0.3
-0.0
+0.8
stress
Vanillin 2.5 mM
+1.4
-0.2
+0.3
-0.0
-0.0
nitrogen source
Cytosine (N)
+1.2
-0.1
+0.4
+0.1
-0.1
carbon source
Carbon source Sucrose 2.5 mM
+0.5
+0.1
-0.3
+0.0
+1.2
resistance
20 mM putrescine
+0.8
-0.1
+0.4
-0.1
+0.4
resistance
10% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
+0.7
-0.1
+0.2
-0.0
+0.8
stress
KB-half, Pseudo5 supernatant
-0.4
-0.0
+0.5
+0.6
+0.9
resistance
50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
+0.7
-0.1
+0.4
-0.1
+0.7
carbon source
Carbon source Sucrose 10 mM
+0.8
+0.1
-0.3
+0.2
+0.9
resistance
50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
+0.7
-0.1
+0.3
-0.0
+0.9
anaerobic
Nitrate reduction with yeast extract
+1.2
-0.8
+0.5
+0.3
+1.3
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.4
+0.5
+0.8
+0.7
+0.5
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