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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_01830 and AO356_01835 are separated by 260 nucleotides
AO356_01835 and AO356_01840 are separated by 78 nucleotides
AO356_01840 and AO356_01845 are separated by 123 nucleotides
AO356_01845 and AO356_01850 are separated by 102 nucleotides
AO356_01830: AO356_01830 - shikimate dehydrogenase, at 408,764 to 409,585
_01830
AO356_01835: AO356_01835 - hypothetical protein, at 409,846 to 410,196
_01835
AO356_01840: AO356_01840 - uracil permease, at 410,275 to 411,792
_01840
AO356_01845: AO356_01845 - N-hydroxyarylamine O-acetyltransferase, at 411,916 to 412,740
_01845
AO356_01850: AO356_01850 - exodeoxyribonuclease III, at 412,843 to 413,637
_01850
Group
Condition
AO356
_01830
AO356
_01835
AO356
_01840
AO356
_01845
AO356
_01850
pH
Minimal media pH9
-2.7
+0.1
+0.1
-0.0
-0.1
carbon source
L-Arabinose (C)
-0.1
-0.1
-1.2
-0.3
+0.1
carbon source
pyruvate (C)
-0.1
-0.0
-1.6
-0.0
+0.2
stress
1-ethyl-3-methylimidazolium acetate 10 mM
-0.1
-0.1
-0.8
-0.3
-0.2
carbon source
D-Fructose (C)
+0.0
-0.2
-1.1
-0.3
+0.2
motility
outer cut, LB soft agar motility assay
-0.1
+0.2
-1.7
+0.1
+0.3
stress
Aluminum chloride 5 mM
+0.1
+0.0
-1.2
-0.2
-0.0
carbon source
L-Proline (C)
+0.1
-0.2
-1.1
+0.0
-0.0
stress
nitrate 200 mM
+0.1
+0.0
-1.4
+0.1
+0.2
carbon source
acetate (C)
-0.0
+0.1
-1.2
+0.1
+0.2
pH
Minimal media pH6
-0.2
+0.0
-0.9
+0.2
-0.0
carbon source
Glycerol (C)
+0.1
+0.0
-1.1
+0.0
+0.1
survival
4C survival; 192 hrs
-0.5
+0.2
-0.8
+0.0
+0.1
carbon source
Fumarate (C)
-0.2
-0.1
-0.7
-0.1
+0.4
survival
4C survival; 360 hrs
-0.4
+0.1
+0.6
-0.1
+0.1
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.1
-0.4
+0.7
+0.2
-0.1
anaerobic
Nitrate reduction with yeast extract
-0.2
-0.2
+0.4
+0.3
+0.2
carbon source
D-Alanine (C)
+0.1
-0.3
+0.7
+0.1
-0.1
carbon source
Carbon source Sucrose 10 mM
-0.2
-0.2
+0.9
+0.1
-0.0
carbon source
D-Glucosamine Hydrochloride (C)
+1.6
-0.7
+0.2
-0.1
-0.2
nitrogen source
L-tyrosine (N)
+0.4
-0.1
+0.6
+0.1
-0.1
carbon source
Carbon source D-Glucose 10 mM
-0.2
+0.0
+1.0
+0.1
+0.0
stress
1-ethyl-3-methylimidazolium chloride 200 mM
+0.2
-0.0
+0.9
+0.1
-0.1
carbon source
Uridine (C)
-0.1
+0.0
+1.1
+0.0
+0.1
stress
Choline chloride 300 mM
+0.1
-0.1
+1.1
-0.1
-0.0
motility
outer cut, LB soft agar motility assay
+0.1
+0.0
+1.0
-0.3
+0.3
stress
Thallium(I) acetate 0.008 mg/ml
+0.3
+0.1
+1.1
-0.0
-0.1
stress
Lomefloxacin 0.0005 mM
-0.1
+0.1
+1.1
+0.2
-0.0
carbon source
Carbon source D,L-Lactate 10 mM
+0.1
+0.1
+1.1
-0.0
+0.1
carbon source
Carbon source D-Mannitol 2.5 mM
+0.0
-0.1
+1.3
+0.3
-0.0
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