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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_01780 and AO356_01785 are separated by 114 nucleotides
AO356_01785 and AO356_01790 are separated by 101 nucleotides
AO356_01790 and AO356_01795 are separated by 469 nucleotides
AO356_01795 and AO356_01800 are separated by 26 nucleotides
AO356_01780: AO356_01780 - D-alanyl-D-alanine endopeptidase, at 400,039 to 400,977
_01780
AO356_01785: AO356_01785 - hypothetical protein, at 401,092 to 401,286
_01785
AO356_01790: AO356_01790 - hypothetical protein, at 401,388 to 402,065
_01790
AO356_01795: AO356_01795 - hypothetical protein, at 402,535 to 403,284
_01795
AO356_01800: AO356_01800 - hypothetical protein, at 403,311 to 403,562
_01800
Group
Condition
AO356
_01780
AO356
_01785
AO356
_01790
AO356
_01795
AO356
_01800
stress
Benzalkonium Chloride 0.016 mg/ml
-1.2
-0.7
-0.8
-0.1
N.D.
stress
Sisomicin 0.001 mg/ml
-1.3
-0.1
-0.5
-0.1
N.D.
stress
1-ethyl-3-methylimidazolium lysine 10 mM
-0.5
-0.3
-0.6
-0.2
N.D.
stress
Rifampicin 0.0024 mg/ml
-0.6
-0.2
-0.4
-0.4
N.D.
stress
Rifampicin 0.0016 mg/ml
-0.3
-0.6
-0.4
-0.2
N.D.
stress
Bacitracin 2 mg/ml
-0.8
-0.0
-0.5
-0.0
N.D.
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.2
-0.0
-0.8
-0.1
N.D.
stress
Benzethonium chloride 0.025 mM
-0.5
-0.1
-0.5
+0.0
N.D.
resistance
10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
-0.2
-0.4
-0.2
-0.2
N.D.
stress
Cholin acetate 40 mM
-0.3
-0.2
-0.4
-0.1
N.D.
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
-0.3
-0.1
-0.1
-0.2
N.D.
stress
Benzalkonium Chloride 0.008 mg/ml
-0.4
+0.2
-0.3
-0.0
N.D.
stress
methylglyoxal 0.016 vol%
+0.0
-0.4
+0.2
-0.3
N.D.
stress
Cisplatin 0.0032 mg/ml
-0.1
-0.4
+0.1
+0.2
N.D.
motility
outer cut, LB soft agar motility assay
-0.2
+0.7
-0.6
+0.1
N.D.
stress
Ceftazidime 0.2 mg/ml
-0.2
+0.3
-0.1
+0.1
N.D.
nitrogen source
L-Leucine (N)
-0.2
+0.4
-0.1
+0.1
N.D.
carbon source
Putrescine (C)
-0.0
+0.3
-0.3
+0.3
N.D.
nitrogen source
Ammonium chloride (N)
+0.1
+0.4
-0.2
-0.1
N.D.
stress
nitrite 10 mM
+0.3
-0.4
+0.3
+0.1
N.D.
nitrogen source
Urea (N)
+0.1
+0.5
-0.2
-0.1
N.D.
stress
1-ethyl-3-methylimidazolium chloride 200 mM
+0.2
+0.2
+0.4
-0.3
N.D.
stress
KB-half, Pseudo5 supernatant
+0.0
+1.1
-0.3
-0.1
N.D.
stress
perchlorate 75 mM
+0.3
+0.2
+0.4
-0.1
N.D.
nitrogen source
D-Alanine (N)
+0.1
+0.6
-0.2
+0.3
N.D.
motility
outer cut, LB soft agar motility assay
+0.2
+0.5
-0.1
+0.3
N.D.
carbon source
Carbon source D,L-Lactate 10 mM
+0.1
+0.3
+0.4
+0.2
N.D.
stress
Choline chloride 500 mM
+0.3
+0.0
+0.3
+0.2
N.D.
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.2
+1.1
-0.2
-0.1
N.D.
stress
Lomefloxacin 0.0005 mM
+0.6
+0.4
+0.5
+0.3
N.D.
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