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Gene
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Cofit
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_01750 and AO356_01755 are separated by 93 nucleotides
AO356_01755 and AO356_01760 are separated by 422 nucleotides
AO356_01760 and AO356_01765 are separated by 58 nucleotides
AO356_01765 and AO356_01770 are separated by 41 nucleotides
AO356_01750: AO356_01750 - ATP-dependent Clp protease proteolytic subunit, at 395,767 to 396,408
_01750
AO356_01755: AO356_01755 - trigger factor, at 396,502 to 397,812
_01755
AO356_01760: AO356_01760 - tRNA-Leu, at 398,235 to 398,319
_01760
AO356_01765: AO356_01765 - tRNA-His, at 398,378 to 398,453
_01765
AO356_01770: AO356_01770 - tRNA-Arg, at 398,495 to 398,571
_01770
Group
Condition
AO356
_01750
AO356
_01755
AO356
_01760
AO356
_01765
AO356
_01770
stress
Benzalkonium Chloride 0.016 mg/ml
-3.4
-2.7
N.D.
N.D.
N.D.
stress
Sisomicin 0.001 mg/ml
-2.6
-2.8
N.D.
N.D.
N.D.
pH
Minimal media pH9
-3.4
-1.7
N.D.
N.D.
N.D.
carbon source
L-Histidine (C)
-3.8
-1.1
N.D.
N.D.
N.D.
carbon source
Carnitine Hydrochloride (C)
-3.3
-1.5
N.D.
N.D.
N.D.
stress
Fusidic 0.1 mg/ml
-2.0
-2.8
N.D.
N.D.
N.D.
anaerobic
Nitrate reduction with yeast extract
-2.5
-2.2
N.D.
N.D.
N.D.
carbon source
Carbon source Sucrose 5 mM
-2.4
-2.1
N.D.
N.D.
N.D.
carbon source
m-Inositol (C)
-3.8
-0.7
N.D.
N.D.
N.D.
stress
Benzethonium chloride 0.025 mM
-3.3
-1.1
N.D.
N.D.
N.D.
carbon source
L-Lysine (C)
-3.4
-0.9
N.D.
N.D.
N.D.
pH
Minimal media pH8
-3.2
-1.0
N.D.
N.D.
N.D.
carbon source
L-Proline (C)
-3.3
-0.9
N.D.
N.D.
N.D.
carbon source
L-Histidine (C)
-3.9
-0.3
N.D.
N.D.
N.D.
carbon source
m-Inositol (C)
-3.6
-0.5
N.D.
N.D.
N.D.
carbon source
D-Lactate (C)
-3.2
-0.9
N.D.
N.D.
N.D.
pH
Minimal media pH6
-3.5
-0.5
N.D.
N.D.
N.D.
carbon source
D-Trehalose (C)
-3.9
+0.1
N.D.
N.D.
N.D.
carbon source
L-Arginine (C)
-3.8
+0.2
N.D.
N.D.
N.D.
carbon source
D-Sorbitol (C)
-3.7
+0.2
N.D.
N.D.
N.D.
carbon source
NAG (C)
-3.7
+0.3
N.D.
N.D.
N.D.
carbon source
L-Aspartic Acid (C)
-3.6
+0.3
N.D.
N.D.
N.D.
carbon source
L-Leucine (C)
-3.5
+0.5
N.D.
N.D.
N.D.
carbon source
Putrescine (C)
-3.7
+0.8
N.D.
N.D.
N.D.
carbon source
Uridine (C)
-3.2
+0.7
N.D.
N.D.
N.D.
carbon source
Ethanol (C)
-3.4
+1.6
N.D.
N.D.
N.D.
carbon source
Ethanol (C)
-3.1
+1.3
N.D.
N.D.
N.D.
motility
outer cut, LB soft agar motility assay
+2.6
+1.5
N.D.
N.D.
N.D.
stress
Choline chloride 500 mM
+0.9
+3.2
N.D.
N.D.
N.D.
motility
outer cut, LB soft agar motility assay
+3.7
+0.8
N.D.
N.D.
N.D.
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