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Cofit
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_01720 and AO356_01725 are separated by 344 nucleotides
AO356_01725 and AO356_01730 are separated by 102 nucleotides
AO356_01730 and AO356_01735 are separated by 47 nucleotides
AO356_01735 and AO356_01740 are separated by 149 nucleotides
AO356_01720: AO356_01720 - hypothetical protein, at 388,062 to 388,955
_01720
AO356_01725: AO356_01725 - peptidylprolyl isomerase, at 389,300 to 391,171
_01725
AO356_01730: AO356_01730 - tRNA-Ser, at 391,274 to 391,348
_01730
AO356_01735: AO356_01735 - DNA-binding protein HU, at 391,396 to 391,668
_01735
AO356_01740: AO356_01740 - DNA-binding protein, at 391,818 to 394,214
_01740
Group
Condition
AO356
_01720
AO356
_01725
AO356
_01730
AO356
_01735
AO356
_01740
motility
outer cut, LB soft agar motility assay
-1.0
N.D.
N.D.
N.D.
-3.4
stress
nitrate 200 mM
-0.3
N.D.
N.D.
N.D.
-3.7
motility
outer cut, LB soft agar motility assay
-0.5
N.D.
N.D.
N.D.
-3.4
carbon source
Putrescine (C)
-0.7
N.D.
N.D.
N.D.
-3.2
motility
outer cut, LB soft agar motility assay
-0.7
N.D.
N.D.
N.D.
-3.1
stress
Sisomicin 0.001 mg/ml
-0.1
N.D.
N.D.
N.D.
-3.6
stress
methylglyoxal 0.016 vol%
+0.2
N.D.
N.D.
N.D.
-3.6
stress
Chlorite 0.04 mM
-0.1
N.D.
N.D.
N.D.
-3.3
carbon source
L-Histidine (C)
+0.3
N.D.
N.D.
N.D.
-3.5
carbon source
D-Lactate (C)
+0.0
N.D.
N.D.
N.D.
-3.0
nitrogen source
Inosine (N)
-0.2
N.D.
N.D.
N.D.
-2.8
stress
acetate 40 mM
-0.1
N.D.
N.D.
N.D.
-2.9
nitrogen source
L-Leucine (N)
-0.6
N.D.
N.D.
N.D.
-2.5
survival
4C survival; 192 hrs
+0.2
N.D.
N.D.
N.D.
-3.2
stress
Cephalothin 2 mg/ml
-0.1
N.D.
N.D.
N.D.
-2.8
stress
Cholin acetate 40 mM
-0.1
N.D.
N.D.
N.D.
-2.8
survival
4C survival; 360 hrs
-0.3
N.D.
N.D.
N.D.
-2.6
stress
Cholin acetate 20 mM
-0.1
N.D.
N.D.
N.D.
-2.6
stress
syringaldehyde 10 mM
-0.1
N.D.
N.D.
N.D.
-2.6
pH
Minimal media pH6
+0.1
N.D.
N.D.
N.D.
-2.8
survival
4C survival; 1152 hrs
-0.4
N.D.
N.D.
N.D.
-2.3
nitrogen source
L-tyrosine (N)
-0.2
N.D.
N.D.
N.D.
-2.5
carbon source
L-Histidine (C)
+0.1
N.D.
N.D.
N.D.
-2.6
stress
nitrite 10 mM
-0.3
N.D.
N.D.
N.D.
-2.2
pH
Minimal media pH6
+0.2
N.D.
N.D.
N.D.
-2.7
stress
Aluminum chloride 5 mM
+0.1
N.D.
N.D.
N.D.
-2.4
carbon source
L-Lysine (C)
+0.3
N.D.
N.D.
N.D.
-2.4
motility
outer cut, LB soft agar motility assay
+0.3
N.D.
N.D.
N.D.
-2.2
stress
Benzethonium chloride 0.025 mM
+0.4
N.D.
N.D.
N.D.
-2.2
stress
Bacitracin 2 mg/ml
+0.8
N.D.
N.D.
N.D.
-2.5
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