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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_01420 and AO356_01425 are separated by 113 nucleotides
AO356_01425 and AO356_01430 are separated by 13 nucleotides
AO356_01430 and AO356_01435 are separated by 142 nucleotides
AO356_01435 and AO356_01440 are separated by 98 nucleotides
AO356_01420: AO356_01420 - hypothetical protein, at 326,237 to 326,734
_01420
AO356_01425: AO356_01425 - LysR family transcriptional regulator, at 326,848 to 327,780
_01425
AO356_01430: AO356_01430 - NADP oxidoreductase, at 327,794 to 328,396
_01430
AO356_01435: AO356_01435 - LysR family transcriptional regulator, at 328,539 to 329,468
_01435
AO356_01440: AO356_01440 - hypothetical protein, at 329,567 to 330,331
_01440
Group
Condition
AO356
_01420
AO356
_01425
AO356
_01430
AO356
_01435
AO356
_01440
motility
outer cut, LB soft agar motility assay
-0.4
-0.1
-0.6
-0.8
+0.1
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.4
-0.6
-0.3
+0.0
+0.1
stress
Bacitracin 2 mg/ml
-0.2
-0.4
-0.5
-0.1
+0.0
stress
Cholin acetate 40 mM
+0.0
-0.5
-0.6
-0.1
+0.0
stress
Benzalkonium Chloride 0.016 mg/ml
-0.1
-0.2
-0.5
+0.1
-0.4
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.5
-0.6
+0.4
-0.4
+0.0
stress
Chlorite 0.04 mM
+0.2
-0.6
-0.4
-0.0
-0.1
nitrogen source
D-Serine (N)
-0.0
-0.2
-0.7
+0.2
-0.1
motility
outer cut, LB soft agar motility assay
+0.3
-0.0
-0.6
-0.3
-0.2
stress
methylglyoxal 0.016 vol%
+0.1
+0.2
-0.7
-0.1
-0.2
carbon source
Carbon source Sucrose 5 mM
+0.2
-0.3
-0.4
-0.2
-0.1
stress
perchlorate 75 mM
-0.4
-0.2
+0.3
-0.3
-0.1
stress
copper (II) chloride 2.5 mM
-0.4
-0.6
+0.1
+0.1
+0.1
stress
Lomefloxacin 0.0005 mM
+0.2
-0.5
+0.0
-0.6
+0.3
motility
outer cut, LB soft agar motility assay
+0.2
+0.2
-0.5
-0.1
-0.3
survival
4C survival; 192 hrs
+0.2
-0.2
-0.4
+0.1
-0.2
carbon source
Fumarate (C)
-0.4
-0.2
+0.4
+0.0
-0.2
carbon source
L-Arabinose (C)
-0.1
-0.2
+0.4
-0.2
-0.2
stress
Chlorite 0.08 mM
-0.4
-0.2
+0.7
+0.1
-0.3
stress
Cisplatin 0.0032 mg/ml
-0.3
-0.4
+0.3
+0.3
-0.1
stress
Thallium(I) acetate 0.008 mg/ml
-0.4
-0.3
+0.3
+0.1
+0.2
stress
1-ethyl-3-methylimidazolium acetate 5 mM
+0.4
-0.5
+0.2
+0.0
-0.2
carbon source
Glycerol (C)
-0.2
+0.2
-0.4
+0.1
+0.3
motility
outer cut, LB soft agar motility assay
+0.0
+0.2
-0.3
-0.3
+0.4
carbon source
D,L-Lactate (C)
-0.2
-0.2
+0.4
+0.2
-0.1
carbon source
D-Lactate (C)
-0.4
-0.0
+0.5
+0.1
+0.0
carbon source
D,L-Lactate (C)
+0.1
-0.3
+0.6
+0.1
+0.1
stress
Paraquat dichloride 0.0625 mg/ml
+0.3
-0.1
+0.6
-0.0
-0.1
survival
4C survival; 360 hrs
+0.8
-0.3
-0.1
-0.1
+0.3
anaerobic
Nitrate reduction with yeast extract
+0.7
+0.2
-0.7
+0.3
+0.3
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