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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_01395 and AO356_01400 are separated by 298 nucleotides
AO356_01400 and AO356_01405 are separated by 46 nucleotides
AO356_01405 and AO356_01410 are separated by 212 nucleotides
AO356_01410 and AO356_01415 are separated by 5 nucleotides
AO356_01395: AO356_01395 - selenide, water dikinase, at 321,924 to 322,958
_01395
AO356_01400: AO356_01400 - ion channel protein Tsx, at 323,257 to 324,207
_01400
AO356_01405: AO356_01405 - purine nucleoside permease, at 324,254 to 325,279
_01405
AO356_01410: AO356_01410 - hypothetical protein, at 325,492 to 325,776
_01410
AO356_01415: AO356_01415 - hypothetical protein, at 325,782 to 326,234
_01415
Group
Condition
AO356
_01395
AO356
_01400
AO356
_01405
AO356
_01410
AO356
_01415
motility
outer cut, LB soft agar motility assay
+0.3
+0.1
+0.1
-2.2
-0.8
stress
nitrite 10 mM
-0.2
+0.1
-0.1
-1.3
-0.2
carbon source
L-Lysine (C)
-0.2
-0.1
+0.1
-0.9
-0.4
stress
Chlorite 0.04 mM
-0.4
-0.1
-0.0
-0.5
-0.5
stress
Rifampicin 0.0024 mg/ml
-0.2
+0.0
+0.1
-1.1
-0.2
carbon source
Carbon source D-Mannitol 5 mM
-0.5
+0.1
+0.1
-1.4
+0.4
stress
Chlorite 0.08 mM
-0.4
-0.0
-0.6
-0.2
-0.1
lb
LB
+0.0
-0.0
-0.1
-0.9
-0.2
stress
methylglyoxal 0.016 vol%
-0.3
+0.1
-0.6
-0.5
+0.1
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.2
+0.2
+0.2
-1.7
+0.4
anaerobic
Nitrate reduction with yeast extract
+0.2
+0.1
-0.4
-0.8
-0.1
stress
Cisplatin 0.0032 mg/ml
-0.2
+0.0
+0.1
-0.8
+0.1
carbon source
D-Sorbitol (C)
-0.1
+0.0
+0.2
-0.8
-0.0
motility
outer cut, LB soft agar motility assay
-0.2
+0.0
+0.3
-0.6
-0.2
stress
Chloramphenicol 0.005 mg/ml
-0.3
+0.1
+0.2
-0.6
-0.1
stress
Ceftazidime 0.2 mg/ml
+0.2
+0.1
+0.3
-1.1
-0.1
carbon source
Carbon source D-Glucose 10 mM
+0.1
+0.0
+0.2
-0.8
+0.1
carbon source
Inosine (C)
-0.2
+0.3
-0.1
-0.6
+0.3
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.5
-0.3
+0.6
-0.0
-0.0
carbon source
Carbon source D-Mannitol 5 mM
-0.0
+0.1
+0.1
-0.7
+0.4
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.3
+0.2
+0.4
+0.2
-0.5
carbon source
L-Glutamic (C)
-0.1
+0.3
+0.3
-0.6
+0.1
stress
copper (II) chloride 2.5 mM
-0.0
+0.2
+0.3
-0.7
+0.5
stress
nitrate 200 mM
-0.2
+0.2
-0.2
+0.5
+0.2
carbon source
L-Leucine (C)
-0.0
+0.1
-0.3
+0.4
+0.4
carbon source
Carbon source D,L-Lactate 10 mM
+0.1
+0.3
+0.4
-0.6
+0.4
carbon source
casaminos (C)
-0.1
-0.1
-0.0
+0.6
+0.4
nitrogen source
L-Isoleucine (N)
-0.2
-0.0
+0.2
+0.4
+0.5
carbon source
D-Mannose (C)
-0.2
+0.1
+0.2
+0.6
+0.4
nitrogen source
Adenosine (N)
-0.6
+5.6
+0.1
-0.6
-0.4
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AO356_01405
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