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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_00820 and AO356_00825 are separated by 118 nucleotides
AO356_00825 and AO356_00830 are separated by 1038 nucleotides
AO356_00830 and AO356_00835 are separated by 420 nucleotides
AO356_00835 and AO356_00840 overlap by 1 nucleotides
AO356_00820: AO356_00820 - alcohol dehydrogenase, at 185,791 to 186,831
_00820
AO356_00825: AO356_00825 - hypothetical protein, at 186,950 to 187,189
_00825
AO356_00830: AO356_00830 - hypothetical protein, at 188,228 to 190,279
_00830
AO356_00835: AO356_00835 - hypothetical protein, at 190,700 to 191,749
_00835
AO356_00840: AO356_00840 - hypothetical protein, at 191,749 to 193,281
_00840
Group
Condition
AO356
_00820
AO356
_00825
AO356
_00830
AO356
_00835
AO356
_00840
carbon source
Carbon source Sucrose 2.5 mM
-0.3
-1.1
+0.1
-0.1
-0.1
carbon source
Carbon source Sucrose 10 mM
-0.2
-0.8
-0.1
-0.0
-0.0
carbon source
Carbon source D-Mannitol 5 mM
-0.2
-0.3
+0.1
-0.4
-0.0
carbon source
Carbon source D-Mannitol 10 mM
-0.2
-0.6
+0.1
-0.2
-0.0
carbon source
acetate (C)
-0.2
-0.1
-0.2
-0.3
-0.1
carbon source
Carbon source Sucrose 5 mM
-0.3
-0.3
+0.1
-0.1
-0.1
carbon source
Carbon source Sucrose 10 mM
-0.4
-0.3
+0.0
+0.1
+0.0
anaerobic
Nitrate reduction with yeast extract
+0.7
-0.8
+0.1
-0.5
+0.1
carbon source
Carbon source D,L-Lactate 10 mM
-0.0
-0.4
+0.2
-0.2
-0.0
survival
4C survival; 360 hrs
+0.2
-0.1
-0.2
-0.2
+0.1
stress
Chlorite 0.04 mM
-0.1
-0.4
-0.1
-0.0
+0.3
stress
1-ethyl-3-methylimidazolium acetate 10 mM
+0.3
-0.5
-0.1
-0.1
+0.1
temperature
LB 10C
+0.3
-0.1
-0.1
-0.2
-0.2
lb
LB
+0.2
-0.5
-0.0
+0.1
-0.0
stress
Sisomicin 0.001 mg/ml
-0.2
-0.1
-0.4
+0.1
+0.5
stress
1-ethyl-3-methylimidazolium acetate 20 mM
+0.2
-0.5
+0.2
-0.1
+0.1
motility
outer cut, LB soft agar motility assay
+0.4
-0.1
-0.1
-0.3
+0.1
carbon source
D-Mannose (C)
+0.2
-0.3
+0.1
-0.1
+0.1
carbon source
Ethanol (C)
+0.0
+0.6
-0.1
-0.0
-0.1
carbon source
L-Arginine (C)
+0.2
+0.4
+0.1
-0.2
-0.0
resistance
10% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
+0.1
+0.5
-0.0
-0.1
+0.1
stress
Lomefloxacin 0.0005 mM
+0.1
+0.5
-0.2
-0.1
+0.1
carbon source
D-Sorbitol (C)
+0.1
+0.4
-0.1
-0.1
+0.2
motility
outer cut, LB soft agar motility assay
-0.0
+0.6
-0.2
+0.3
-0.1
carbon source
L-Histidine (C)
+0.3
+0.4
-0.0
-0.1
+0.0
carbon source
Fumarate (C)
-0.1
+0.5
+0.2
+0.1
+0.1
carbon source
L-Asparagine (C)
+0.2
+0.4
+0.1
-0.0
+0.1
stress
Chloramphenicol 0.005 mg/ml
+0.0
+0.4
-0.0
+0.2
+0.2
stress
methylglyoxal 0.016 vol%
+0.3
+0.1
+0.1
+0.2
+0.2
carbon source
Cytidine (C)
+0.2
+0.5
+0.1
+0.1
-0.0
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