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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_00805 and AO356_00810 are separated by 60 nucleotides
AO356_00810 and AO356_00815 are separated by 228 nucleotides
AO356_00815 and AO356_00820 overlap by 4 nucleotides
AO356_00820 and AO356_00825 are separated by 118 nucleotides
AO356_00805: AO356_00805 - glycosyl transferase, at 182,114 to 183,220
_00805
AO356_00810: AO356_00810 - hypothetical protein, at 183,281 to 183,544
_00810
AO356_00815: AO356_00815 - hypothetical protein, at 183,773 to 185,794
_00815
AO356_00820: AO356_00820 - alcohol dehydrogenase, at 185,791 to 186,831
_00820
AO356_00825: AO356_00825 - hypothetical protein, at 186,950 to 187,189
_00825
Group
Condition
AO356
_00805
AO356
_00810
AO356
_00815
AO356
_00820
AO356
_00825
stress
Sisomicin 0.001 mg/ml
-0.6
-2.7
+0.0
-0.2
-0.1
carbon source
Carbon source Sucrose 2.5 mM
-0.4
-0.4
-0.1
-0.3
-1.1
stress
1-ethyl-3-methylimidazolium acetate 20 mM
+0.1
-1.6
+0.0
+0.2
-0.5
carbon source
Carbon source Sucrose 10 mM
-0.1
-0.9
-0.0
-0.4
-0.3
carbon source
L-Lysine (C)
+0.1
-1.1
-0.3
+0.1
-0.1
stress
Cholin acetate 40 mM
+0.2
-1.0
-0.0
-0.3
-0.1
stress
Chlorite 0.04 mM
+0.1
-0.9
+0.0
-0.1
-0.4
stress
Benzalkonium Chloride 0.016 mg/ml
+0.0
-1.4
-0.0
+0.1
+0.1
motility
outer cut, LB soft agar motility assay
+0.3
-1.5
-0.0
+0.1
-0.1
stress
nitrite 10 mM
-0.0
-1.2
+0.0
+0.2
-0.1
carbon source
D-Glucose (C)
+0.1
-1.2
-0.0
-0.1
+0.1
carbon source
NAG (C)
-0.3
-0.9
+0.0
+0.2
-0.1
carbon source
D-Xylose (C)
+0.4
-1.1
-0.2
-0.1
-0.1
stress
perchlorate 75 mM
-0.5
-0.7
+0.1
+0.1
+0.0
stress
Paraquat dichloride 0.0625 mg/ml
-0.0
-1.0
-0.1
+0.0
+0.2
stress
1-ethyl-3-methylimidazolium acetate 5 mM
+0.1
-1.4
+0.0
-0.0
+0.6
stress
Lomefloxacin 0.0005 mM
-0.2
-1.2
+0.2
+0.1
+0.5
stress
syringaldehyde 5 mM
-0.5
+0.4
-0.0
+0.1
-0.4
carbon source
Cytidine (C)
-0.4
-0.6
+0.0
+0.2
+0.5
carbon source
Carbon source Sucrose 10 mM
+0.1
+0.7
+0.0
-0.2
-0.8
motility
outer cut, LB soft agar motility assay
+0.4
-0.9
-0.0
-0.0
+0.6
stress
Nickel (II) chloride 0.625 mM
+0.5
-0.8
+0.0
+0.1
+0.5
anaerobic
Nitrate reduction with yeast extract
-0.4
+1.2
-0.2
+0.7
-0.8
stress
Nickel (II) chloride 0.625 mM
+0.4
+0.7
-0.1
-0.1
-0.5
survival
4C survival; 1152 hrs
+1.3
-0.2
-0.1
+0.1
-0.3
resistance
50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
-0.3
+0.8
+0.1
+0.1
+0.3
stress
methylglyoxal 0.016 vol%
-0.4
+1.0
+0.1
+0.3
+0.1
carbon source
a-Ketoglutaric (C)
+0.6
+0.5
-0.0
+0.1
+0.2
motility
outer cut, LB soft agar motility assay
+0.6
+0.5
-0.0
+0.4
-0.1
motility
outer cut, LB soft agar motility assay
+0.2
+1.6
-0.0
-0.1
-0.0
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