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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_00770 and AO356_00775 are separated by 12 nucleotides
AO356_00775 and AO356_00780 are separated by 32 nucleotides
AO356_00780 and AO356_00785 overlap by 4 nucleotides
AO356_00785 and AO356_00790 are separated by 188 nucleotides
AO356_00770: AO356_00770 - glycosyl transferase, at 173,481 to 175,937
_00770
AO356_00775: AO356_00775 - glycosyl transferase family 2, at 175,950 to 176,972
_00775
AO356_00780: AO356_00780 - methyltransferase, at 177,005 to 177,751
_00780
AO356_00785: AO356_00785 - polysaccharide synthesis protein GtrA, at 177,748 to 178,155
_00785
AO356_00790: AO356_00790 - epimerase, at 178,344 to 179,441
_00790
Group
Condition
AO356
_00770
AO356
_00775
AO356
_00780
AO356
_00785
AO356
_00790
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.1
-0.3
-0.9
-0.2
-1.0
pH
Minimal media pH9
+0.1
-0.1
-0.5
-0.1
-0.9
carbon source
L-Lysine (C)
-0.1
-0.1
-0.6
-0.2
-0.5
nitrogen source
Carnitine Hydrochloride (N)
-0.2
-0.0
-0.3
-0.6
-0.3
carbon source
D,L-Lactate (C)
-0.1
-0.1
-0.4
-0.1
-0.5
stress
Sisomicin 0.001 mg/ml
-0.1
-0.3
-0.6
-0.4
+0.1
stress
Cobalt chloride 0.08 mM
-0.1
+0.1
-0.6
-0.6
+0.1
survival
4C survival; 24 hrs
+0.1
+0.0
-0.8
-0.1
-0.1
carbon source
D-Ribose (C)
-0.0
+0.1
-0.4
+0.1
-0.6
anaerobic
Nitrate reduction with yeast extract
+0.1
+0.3
-1.1
-0.3
+0.2
stress
Rifampicin 0.0016 mg/ml
-0.0
+0.0
+0.2
+0.1
-1.0
carbon source
Fumarate (C)
-0.2
-0.0
-0.1
+0.3
-0.7
stress
sodium fluoride 6.25 mM
-0.2
+0.1
-0.4
+0.2
-0.4
motility
outer cut, LB soft agar motility assay
+0.0
+0.1
-0.2
+0.3
-0.9
carbon source
L-Isoleucine (C)
-0.3
+0.3
-0.3
+0.1
-0.4
carbon source
L-Arabinose (C)
-0.1
+0.0
-0.4
+0.4
-0.4
temperature
LB 30C
+0.1
+0.1
-0.6
+0.2
-0.2
carbon source
D-Fructose (C)
-0.0
-0.0
-0.0
+0.4
-0.6
stress
copper (II) chloride 2.5 mM
+0.1
+0.2
+0.1
-0.9
+0.3
stress
Lomefloxacin 0.0005 mM
+0.1
+0.0
-0.6
+1.0
-0.7
stress
Thallium(I) acetate 0.008 mg/ml
+0.0
-0.2
+0.5
+0.2
-0.7
carbon source
L-Lactate (C)
-0.1
-0.1
+0.3
+0.2
-0.4
lb
LB
+0.2
-0.1
-0.4
-0.0
+0.4
motility
outer cut, LB soft agar motility assay
-0.0
+0.1
+0.2
-0.4
+0.5
stress
Benzalkonium Chloride 0.016 mg/ml
+0.0
+0.1
+0.3
-0.7
+0.6
pH
Minimal media pH8
+0.1
-0.1
-0.2
-0.2
+0.7
stress
nitrite 10 mM
+0.2
+0.1
-0.4
+0.6
+0.0
stress
Paraquat dichloride 0.0625 mg/ml
+0.0
-0.2
+0.2
+0.6
+0.4
stress
KB-half, Pseudo5 supernatant
-0.0
-0.1
+0.4
+0.7
+0.8
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.2
+0.2
+0.4
+0.3
+1.3
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