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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_00760 and AO356_00765 are separated by 143 nucleotides
AO356_00765 and AO356_00770 are separated by 178 nucleotides
AO356_00770 and AO356_00775 are separated by 12 nucleotides
AO356_00775 and AO356_00780 are separated by 32 nucleotides
AO356_00760: AO356_00760 - sugar ABC transporter permease, at 169,893 to 170,711
_00760
AO356_00765: AO356_00765 - glycosyl transferase, at 170,855 to 173,302
_00765
AO356_00770: AO356_00770 - glycosyl transferase, at 173,481 to 175,937
_00770
AO356_00775: AO356_00775 - glycosyl transferase family 2, at 175,950 to 176,972
_00775
AO356_00780: AO356_00780 - methyltransferase, at 177,005 to 177,751
_00780
Group
Condition
AO356
_00760
AO356
_00765
AO356
_00770
AO356
_00775
AO356
_00780
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.0
+0.0
-0.1
-0.3
-0.9
anaerobic
Nitrate reduction with yeast extract
-0.4
+0.1
+0.1
+0.3
-1.1
survival
4C survival; 192 hrs
-0.1
-0.1
+0.1
-0.2
-0.6
stress
Sisomicin 0.001 mg/ml
+0.0
+0.0
-0.1
-0.3
-0.6
pH
Minimal media pH9
-0.1
-0.1
+0.1
-0.1
-0.5
carbon source
L-Lysine (C)
+0.0
+0.1
-0.1
-0.1
-0.6
nitrogen source
D-Serine (N)
-0.4
+0.1
-0.1
-0.3
+0.1
carbon source
D-Trehalose (C)
-0.1
+0.2
-0.1
-0.2
-0.2
carbon source
NAG (C)
-0.0
+0.1
-0.2
+0.2
-0.4
survival
4C survival; 24 hrs
+0.1
+0.1
+0.1
+0.0
-0.8
stress
Cobalt chloride 0.08 mM
+0.2
-0.0
-0.1
+0.1
-0.6
resistance
20 mM putrescine
+0.1
-0.2
-0.2
+0.1
-0.2
carbon source
D,L-Lactate (C)
+0.2
+0.1
-0.1
-0.1
-0.4
carbon source
L-Isoleucine (C)
+0.1
+0.0
-0.3
+0.3
-0.3
temperature
LB 30C
+0.1
+0.1
+0.1
+0.1
-0.6
stress
Lomefloxacin 0.0005 mM
+0.0
+0.3
+0.1
+0.0
-0.6
stress
Cobalt chloride 0.08 mM
+0.2
-0.1
-0.1
-0.3
+0.2
stress
Tetracycline 0.0001 mg/ml
-0.1
+0.1
-0.1
-0.3
+0.5
lb
LB
+0.2
+0.2
-0.1
-0.1
-0.2
carbon source
L-Arabinose (C)
+0.3
+0.2
-0.1
+0.0
-0.4
carbon source
D-Xylose (C)
+0.2
+0.3
-0.1
-0.1
-0.2
carbon source
a-Ketoglutaric (C)
+0.2
+0.3
-0.1
-0.1
-0.2
stress
nitrite 10 mM
+0.0
+0.3
+0.2
+0.1
-0.4
survival
4C survival; 672 hrs
+0.1
+0.3
+0.0
+0.0
-0.3
carbon source
L-Lactate (C)
+0.4
+0.0
-0.1
-0.1
+0.3
stress
Thallium(I) acetate 0.008 mg/ml
+0.2
-0.0
+0.0
-0.2
+0.5
carbon source
D-Xylose (C)
+0.1
+0.3
-0.1
-0.1
+0.2
carbon source
pyruvate (C)
+0.2
+0.2
-0.1
-0.1
+0.3
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.0
-0.1
+0.2
+0.2
+0.4
survival
4C survival; 1152 hrs
+0.2
+0.6
+0.1
+0.0
-0.2
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