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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_00620 and AO356_00625 are separated by 139 nucleotides
AO356_00625 and AO356_00630 are separated by 9 nucleotides
AO356_00630 and AO356_00635 are separated by 83 nucleotides
AO356_00635 and AO356_00640 are separated by 163 nucleotides
AO356_00620: AO356_00620 - LysR family transcriptional regulator, at 132,882 to 133,820
_00620
AO356_00625: AO356_00625 - (Fe-S)-binding protein, at 133,960 to 135,216
_00625
AO356_00630: AO356_00630 - ferredoxin, at 135,226 to 136,362
_00630
AO356_00635: AO356_00635 - phenylacetic acid degradation protein, at 136,446 to 136,886
_00635
AO356_00640: AO356_00640 - TetR family transcriptional regulator, at 137,050 to 137,670
_00640
Group
Condition
AO356
_00620
AO356
_00625
AO356
_00630
AO356
_00635
AO356
_00640
anaerobic
Nitrate reduction with yeast extract
+0.0
-1.1
-0.0
-0.6
-0.3
stress
Sisomicin 0.001 mg/ml
-0.5
-0.4
-0.9
-0.2
+0.2
stress
copper (II) chloride 2.5 mM
-0.3
-0.3
-0.4
-0.4
-0.2
survival
4C survival; 1152 hrs
-0.1
+0.1
-0.3
-0.2
-0.8
stress
Cephalothin 2 mg/ml
+0.0
-0.1
-0.7
-0.3
-0.2
carbon source
Carbon source D,L-Lactate 10 mM
-0.2
-0.3
-0.5
+0.2
-0.1
motility
outer cut, LB soft agar motility assay
+0.2
-0.1
+0.1
-1.1
-0.0
nitrogen source
L-Leucine (N)
+0.1
-0.3
+0.1
-0.2
-0.6
carbon source
D-Trehalose (C)
-0.2
+0.2
+0.2
-0.4
-0.6
carbon source
Carbon source D-Mannitol 10 mM
-0.2
+0.3
-0.8
+0.1
-0.1
carbon source
Ethanol (C)
-0.1
-0.2
-0.3
-0.4
+0.2
carbon source
Carbon source D-Mannitol 2.5 mM
-0.1
-0.2
-0.4
+0.3
-0.3
stress
Choline chloride 300 mM
-0.1
+0.2
-0.3
-0.2
-0.3
stress
Choline chloride 500 mM
+0.3
-0.0
+0.1
-0.5
-0.3
nitrogen source
Inosine (N)
-0.1
+0.5
-0.2
-0.2
-0.5
carbon source
Carbon source Sucrose 5 mM
-0.2
-0.2
-0.3
+0.4
-0.3
motility
outer cut, LB soft agar motility assay
+0.5
-0.3
-0.4
-0.3
+0.1
carbon source
Carbon source Sucrose 10 mM
-0.0
+0.2
-0.5
-0.4
+0.2
carbon source
Fumarate (C)
-0.2
-0.5
+0.1
-0.2
+0.2
motility
outer cut, LB soft agar motility assay
-0.2
+0.6
-0.2
-0.7
+0.1
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.2
+0.4
-0.1
+0.1
-0.4
stress
Nalidixic 0.004 mg/ml
-0.4
+0.2
-0.3
+0.3
+0.1
motility
outer cut, LB soft agar motility assay
+0.1
-0.0
-0.8
+0.8
-0.3
pH
Minimal media pH9
-0.3
-0.2
+0.4
+0.4
-0.4
stress
KB-half, Pseudo5 supernatant
-0.1
+0.3
-0.3
+0.4
-0.2
nitrogen source
Uridine (N)
-0.2
+0.5
-0.2
+0.2
-0.2
stress
Chlorite 0.04 mM
+0.2
+0.5
+0.0
-0.2
-0.3
carbon source
L-Glutamine (C)
+0.3
+0.2
+0.5
-0.2
-0.1
stress
nitrite 10 mM
-0.3
+0.2
+0.5
+0.1
+0.2
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.1
+0.3
+0.1
+0.7
+0.1
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