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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_00305 and AO356_00310 are separated by 211 nucleotides
AO356_00310 and AO356_00315 overlap by 8 nucleotides
AO356_00315 and AO356_00320 are separated by 111 nucleotides
AO356_00320 and AO356_00325 are separated by 145 nucleotides
AO356_00305: AO356_00305 - hypothetical protein, at 56,659 to 57,279
_00305
AO356_00310: AO356_00310 - hypothetical protein, at 57,491 to 58,111
_00310
AO356_00315: AO356_00315 - nucleotidyltransferase, at 58,104 to 59,387
_00315
AO356_00320: AO356_00320 - hypothetical protein, at 59,499 to 60,803
_00320
AO356_00325: AO356_00325 - RNA helicase, at 60,949 to 63,414
_00325
Group
Condition
AO356
_00305
AO356
_00310
AO356
_00315
AO356
_00320
AO356
_00325
stress
Cholin acetate 40 mM
-0.2
-0.6
-0.0
-0.1
+0.1
stress
KB-half, Pseudo5 supernatant
-0.0
-0.2
-0.1
-0.3
-0.1
stress
Benzalkonium Chloride 0.008 mg/ml
-0.3
-0.2
+0.1
+0.0
+0.0
carbon source
D-Ribose (C)
+0.1
+0.1
-0.1
-0.3
-0.1
anaerobic
Nitrate reduction with yeast extract
-0.2
+0.1
-0.2
+0.3
-0.1
carbon source
L-Histidine (C)
+0.1
+0.3
-0.2
-0.1
-0.1
stress
nitrite 10 mM
+0.1
+0.3
-0.2
+0.0
-0.1
motility
outer cut, LB soft agar motility assay
+0.3
-0.5
-0.1
+0.4
-0.0
nitrogen source
D-Serine (N)
-0.0
+0.2
+0.1
-0.3
+0.0
stress
Sisomicin 0.001 mg/ml
-0.1
+0.2
-0.0
+0.2
-0.1
stress
Rifampicin 0.0024 mg/ml
+0.2
-0.2
-0.1
+0.2
-0.0
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.1
-0.2
+0.2
+0.1
-0.0
motility
outer cut, LB soft agar motility assay
-0.1
+0.2
-0.1
-0.0
+0.2
carbon source
L-Malic (C)
-0.0
+0.1
+0.1
+0.2
-0.1
nitrogen source
D-Alanine (N)
+0.1
+0.2
+0.2
-0.0
-0.1
carbon source
Fumarate (C)
+0.2
+0.2
+0.1
-0.1
+0.0
stress
Vanillin 2.5 mM
+0.2
+0.2
+0.1
+0.1
-0.1
motility
outer cut, LB soft agar motility assay
-0.1
+0.1
+0.2
+0.4
-0.1
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.0
+0.0
+0.2
+0.2
+0.2
stress
Lomefloxacin 0.0005 mM
-0.1
-0.3
-0.1
+0.2
+0.8
stress
Cisplatin 0.0032 mg/ml
+0.0
+0.1
-0.0
-0.0
+0.5
stress
methylglyoxal 0.016 vol%
+0.2
+0.3
+0.1
+0.1
-0.1
carbon source
L-Lysine (C)
+0.1
+0.3
+0.1
+0.1
-0.0
stress
copper (II) chloride 2.5 mM
-0.2
+0.5
-0.0
+0.2
+0.2
stress
Benzalkonium Chloride 0.016 mg/ml
+0.1
+0.3
+0.0
+0.1
+0.1
pH
Minimal media pH8
+0.0
+0.2
+0.1
+0.2
+0.2
carbon source
Fumarate (C)
+0.2
+0.2
+0.2
+0.0
+0.1
stress
Thallium(I) acetate 0.008 mg/ml
+0.1
+0.2
+0.2
+0.2
+0.2
stress
Vanillin 1.25 mM
+0.1
+0.3
+0.2
+0.3
+0.1
stress
Cisplatin 0.0032 mg/ml
+0.1
+0.2
+0.1
+0.1
+0.5
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