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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_00285 and AO356_00290 are separated by 130 nucleotides
AO356_00290 and AO356_00295 are separated by 132 nucleotides
AO356_00295 and AO356_00300 are separated by 229 nucleotides
AO356_00300 and AO356_00305 are separated by 494 nucleotides
AO356_00285: AO356_00285 - hypothetical protein, at 52,461 to 52,790
_00285
AO356_00290: AO356_00290 - DNA primase, at 52,921 to 53,883
_00290
AO356_00295: AO356_00295 - hypothetical protein, at 54,016 to 54,210
_00295
AO356_00300: AO356_00300 - relaxase, at 54,440 to 56,164
_00300
AO356_00305: AO356_00305 - hypothetical protein, at 56,659 to 57,279
_00305
Group
Condition
AO356
_00285
AO356
_00290
AO356
_00295
AO356
_00300
AO356
_00305
stress
copper (II) chloride 2.5 mM
-0.9
-0.1
-0.8
+0.0
-0.2
anaerobic
Nitrate reduction with yeast extract
-1.1
-0.0
-0.4
+0.3
-0.2
motility
outer cut, LB soft agar motility assay
-1.2
-0.2
+0.7
-0.2
-0.1
stress
Sisomicin 0.001 mg/ml
-0.6
-0.5
+0.2
-0.0
-0.1
stress
Choline chloride 300 mM
-0.3
-0.2
-0.5
+0.0
+0.1
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.5
+0.3
-0.5
-0.0
-0.0
stress
Ceftazidime 0.2 mg/ml
+0.2
-0.4
-0.5
+0.1
+0.1
stress
Cholin acetate 40 mM
-0.7
+0.4
-0.1
+0.0
-0.2
stress
Nickel (II) chloride 0.625 mM
+0.2
-0.1
-0.6
-0.1
+0.1
carbon source
Ethanol (C)
+0.1
-0.4
-0.3
+0.1
+0.0
motility
outer cut, LB soft agar motility assay
-0.3
+0.4
-0.4
+0.0
-0.1
stress
Benzalkonium Chloride 0.008 mg/ml
-0.2
-0.3
+0.2
+0.2
-0.3
carbon source
L-Alanine (C)
+0.2
-0.3
-0.2
-0.1
+0.1
stress
Lomefloxacin 0.0005 mM
+0.3
+0.3
-0.3
-0.0
-0.1
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.1
-0.1
-0.3
+0.2
+0.2
carbon source
Carbon source D-Glucose 10 mM
-0.2
+0.3
+0.4
-0.2
-0.1
stress
Chlorite 0.04 mM
+0.3
-0.3
+0.4
-0.0
+0.0
carbon source
NAG (C)
+0.2
-0.4
+0.4
+0.1
+0.1
stress
methylglyoxal 0.016 vol%
+0.4
+0.0
-0.2
-0.1
+0.2
nitrogen source
L-Isoleucine (N)
+0.3
-0.2
+0.3
+0.1
+0.1
motility
outer cut, LB soft agar motility assay
+0.3
-0.2
+0.0
+0.4
+0.1
carbon source
L-Aspartic Acid (C)
+0.5
+0.1
+0.1
+0.2
-0.1
nitrogen source
L-Phenylalanine (N)
+0.3
-0.1
+0.3
+0.2
+0.1
carbon source
Carbon source D-Mannitol 5 mM
+0.3
-0.0
+0.5
+0.2
-0.0
carbon source
L-Isoleucine (C)
+0.3
+0.0
+0.2
+0.2
+0.1
nitrogen source
D-Serine (N)
+0.5
-0.1
+0.4
+0.2
-0.0
motility
outer cut, LB soft agar motility assay
+0.3
+0.1
-0.0
+0.2
+0.3
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.3
+0.1
+0.4
+0.1
+0.1
carbon source
L-Proline (C)
+0.4
+0.1
+0.4
+0.0
+0.1
carbon source
L-Leucine (C)
+0.2
+0.2
+0.4
+0.2
+0.1
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