Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_29305 and AO353_29310 are separated by 334 nucleotidesAO353_29310 and AO353_29315 overlap by 4 nucleotidesAO353_29315 and AO353_29320 overlap by 4 nucleotidesAO353_29320 and AO353_29325 are separated by 187 nucleotides AO353_29305: AO353_29305 - Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) (from data), at 6,366,833 to 6,367,594 _29305 AO353_29310: AO353_29310 - transporter, at 6,367,929 to 6,369,071 _29310 AO353_29315: AO353_29315 - spermidine/putrescine ABC transporter permease, at 6,369,068 to 6,369,982 _29315 AO353_29320: AO353_29320 - putrescine ABC transporter, permease component (from data), at 6,369,979 to 6,370,878 _29320 AO353_29325: AO353_29325 - GntR family transcriptional regulator, at 6,371,066 to 6,372,454 _29325
Group Condition AO353_29305 AO353_29310 AO353_29315 AO353_29320 AO353_29325
carbon source Putrescine (C) -3.7 -3.6 -4.0 -3.8 -0.2
nitrogen source Putrescine (N) -0.9 -1.0 -1.4 -1.2 +0.2
carbon source L-Citrulline -0.1 -0.5 -0.2 -1.1 -0.4
carbon source L-Citrulline -0.9 -0.0 -0.1 -0.5 -0.4
carbon source L-Ornithine -0.5 -0.3 -0.2 -0.1 -0.6
carbon source L-Ornithine -0.3 -0.1 -0.1 -0.3 -0.6
motility outer cut, LB soft agar motility assay -1.0 +0.2 -0.0 -0.7 +0.1
stress 1-ethyl-3-methylimidazolium acetate 15 mM -0.2 -0.6 -0.0 -0.0 -0.5
stress Sisomicin 0.008 mg/ml -0.4 -0.2 -0.2 +0.2 -0.8
carbon source D-Mannose (C) -0.4 -0.1 -0.3 -0.5 -0.0
stress Cholin acetate 38 mM -0.6 -0.2 -0.1 +0.0 -0.5
carbon source propionate (C) -0.1 -0.2 +0.0 -0.1 -0.9
carbon source L-Citrulline -0.5 -0.3 +0.3 -0.7 +0.0
stress Cisplatin 0.006 mg/ml -0.5 +0.4 -0.1 -0.9 -0.0
stress copper (II) chloride 2.5 mM +0.1 -0.3 -0.3 -0.3 -0.2
carbon source m-Inositol (C) -0.4 -0.3 +0.1 +0.2 -0.5
stress Tetracycline 0.0016 mg/ml +0.1 -0.5 -0.3 +0.1 -0.4
nitrogen source Gly-DL-Asp (N) -0.4 -0.1 +0.2 -0.4 -0.2
anaerobic Anaerobic, acetate donor; nitrate and iron -1.0 -0.1 +0.3 -0.3 +0.3
stress nitrate 200 mM -0.2 -0.0 +0.1 -0.8 +0.1
carbon source L-Glutamine (C) -0.5 +0.2 -0.2 -0.1 -0.2
stress 1-ethyl-3-methylimidazolium acetate 20 mM -0.5 -0.1 +0.0 +0.2 -0.4
motility outer cut, LB soft agar motility assay -0.7 +0.0 +0.1 +0.3 -0.3
stress Paraquat dichloride 0.032 mg/mL +0.2 +0.2 -0.2 +0.0 -0.7
carbon source D-Glucose +0.2 -0.1 +0.2 -0.5 -0.2
stress Benzalkonium Chloride 0.012 mg/ml +0.4 -0.1 +0.1 +0.3 -0.3
denitrifying Nitrate reduction, replicate B +0.5 -0.3 +0.0 -0.3 +0.4
motility outer cut, LB soft agar motility assay +0.4 -0.4 -0.2 +0.5 +0.1
nitrogen source Parabanic Acid (N) -0.2 +0.2 +0.1 +0.4 +0.3
stress Doxycycline hyclate 0.0006 mg/ml -0.1 +0.2 +0.5 +0.4 +0.1
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