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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_29025 and AO353_29030 are separated by 17 nucleotides
AO353_29030 and AO353_29035 are separated by 518 nucleotides
AO353_29035 and AO353_29040 are separated by 44 nucleotides
AO353_29040 and AO353_29045 are separated by 231 nucleotides
AO353_29025: AO353_29025 - LysR family transcriptional regulator, at 6,308,236 to 6,309,189
_29025
AO353_29030: AO353_29030 - GntR family transcriptional regulator, at 6,309,207 to 6,309,917
_29030
AO353_29035: AO353_29035 - MFS transporter, at 6,310,436 to 6,311,788
_29035
AO353_29040: AO353_29040 - glucarate dehydratase, at 6,311,833 to 6,313,182
_29040
AO353_29045: AO353_29045 - glycosyltransferase, at 6,313,414 to 6,314,268
_29045
Group
Condition
AO353
_29025
AO353
_29030
AO353
_29035
AO353
_29040
AO353
_29045
motility
outer cut, LB soft agar motility assay
-1.0
+0.0
-0.2
-0.7
-0.2
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.2
-0.0
-0.2
-0.2
-0.3
stress
Lomefloxacin 0.001 mM
-0.7
-0.2
-0.0
+0.1
-0.2
stress
Rifampicin 0.005 mg/ml
-0.4
-0.5
-0.0
+0.1
-0.1
carbon source
L-Asparagine (C)
-0.4
-0.1
+0.0
+0.1
-0.4
stress
Vancomycin 1 mg/ml
-0.5
+0.1
-0.1
-0.1
-0.2
stress
copper (II) chloride 2.5 mM
-0.2
+0.2
-0.1
-0.4
-0.2
stress
Cobalt chloride 0.32 mM
-0.4
+0.3
+0.1
-0.7
+0.0
carbon source
L-Ornithine
-0.5
+0.0
+0.0
+0.3
-0.4
carbon source
L-Leucine (C)
-0.6
-0.0
+0.2
+0.2
-0.2
stress
Cisplatin 0.006 mg/ml
-0.5
-0.0
+0.0
-0.5
+0.5
carbon source
L-Valine (C)
-0.3
-0.3
+0.1
-0.1
+0.2
survival
4C survival; 360 hrs
+0.4
-0.3
+0.0
-0.3
-0.2
denitrifying
Nitrate reduction, replicate B
-0.6
-0.0
+0.0
-0.1
+0.4
stress
methylglyoxal 0.009 vol%
+0.0
+0.2
-0.1
-0.6
+0.1
stress
Doxycycline hyclate 0.0006 mg/ml
+0.4
-0.0
-0.2
-0.0
-0.3
stress
Cobalt chloride 0.32 mM
-0.3
+0.5
-0.1
-0.2
-0.1
carbon source
Trisodium citrate (C)
+0.3
+0.2
-0.2
-0.3
-0.2
stress
sodium fluoride 6.25 mM
-0.3
+0.5
+0.1
-0.2
-0.2
stress
Furfuryl Alcohol 0.0625 vol%
+0.5
-0.0
-0.2
-0.1
-0.2
carbon source
acetate (C)
+0.3
+0.4
-0.2
-0.4
-0.1
stress
1-ethyl-3-methylimidazolium chloride 170 mM
+0.5
-0.3
-0.1
-0.2
+0.1
carbon source
L-Phenylalanine (C)
+0.5
+0.2
-0.2
-0.2
-0.1
carbon source
pyruvate (C)
+0.3
-0.0
+0.2
-0.4
+0.2
motility
outer cut, LB soft agar motility assay
+0.5
+0.4
+0.0
-0.1
-0.5
carbon source
L-Citrulline
-0.3
-0.2
+0.2
+0.3
+0.4
pH
Minimal media pH9
+0.5
-0.2
-0.1
+0.2
+0.0
stress
Thallium(I) acetate 0.008 mg/ml
-0.1
-0.3
+0.1
+0.2
+0.5
stress
Sisomicin 0.008 mg/ml
+0.6
-0.2
-0.4
+0.6
+0.1
stress
syringaldehyde 5 mM
+0.5
+0.2
+0.1
-0.1
+0.1
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