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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_29005 and AO353_29010 are separated by 262 nucleotides
AO353_29010 and AO353_29015 are separated by 308 nucleotides
AO353_29015 and AO353_29020 are separated by 81 nucleotides
AO353_29020 and AO353_29025 are separated by 141 nucleotides
AO353_29005: AO353_29005 - hypothetical protein, at 6,304,864 to 6,305,205
_29005
AO353_29010: AO353_29010 - hypothetical protein, at 6,305,468 to 6,305,746
_29010
AO353_29015: AO353_29015 - ABC transporter substrate-binding protein, at 6,306,055 to 6,306,843
_29015
AO353_29020: AO353_29020 - amidohydrolase, at 6,306,925 to 6,308,094
_29020
AO353_29025: AO353_29025 - LysR family transcriptional regulator, at 6,308,236 to 6,309,189
_29025
Group
Condition
AO353
_29005
AO353
_29010
AO353
_29015
AO353
_29020
AO353
_29025
stress
Doxycycline hyclate 0.0006 mg/ml
-2.7
+0.3
+0.2
-0.6
+0.4
motility
outer cut, LB soft agar motility assay
-0.8
+0.2
-1.2
+0.5
-1.0
carbon source
L-Citrulline
-0.8
+0.3
-0.6
-0.1
-0.3
anaerobic
N1B4wt with N2E3m denitrifying replicate C
-0.2
-0.5
+0.2
-0.8
-0.3
stress
1-ethyl-3-methylimidazolium acetate 15 mM
-0.9
+0.3
-0.4
-0.6
+0.0
stress
Nickel (II) chloride 0.625 mM
-1.3
-0.0
-0.3
-0.1
+0.4
pH
Minimal media pH9
-1.0
-0.0
-0.4
-0.3
+0.5
temperature
LB 30C
-1.1
-0.5
+0.3
+0.2
-0.1
carbon source
L-Ornithine
-0.3
+0.3
-0.5
-0.4
-0.4
stress
Spectinomycin 0.2 mg/ml
-1.3
+0.4
-0.2
-0.1
+0.2
stress
Cobalt chloride 0.16 mM
-1.4
+0.1
+0.1
+0.4
-0.3
motility
outer cut, LB soft agar motility assay
-0.3
-0.3
-1.2
+0.3
+0.4
carbon source
propionate (C)
-1.4
+0.3
+0.4
-0.1
-0.3
motility
outer cut, LB soft agar motility assay
-0.8
-0.2
-0.5
+0.6
+0.5
denitrifying
Nitrate reduction, replicate B
+0.8
-0.5
-0.2
-0.1
-0.6
stress
Lomefloxacin 0.001 mM
-0.2
-0.2
+0.3
+0.6
-0.7
carbon source
L-Phenylalanine (C)
+0.1
-0.4
+0.3
-0.6
+0.5
carbon source
D-Glucose
-0.4
+0.4
-0.4
+0.6
-0.1
stress
Sisomicin 0.008 mg/ml
+0.6
+0.4
-0.9
-0.5
+0.6
stress
Benzethonium chloride 0.025 mM
-0.5
-0.2
+0.2
+0.3
+0.7
carbon source
L-Ornithine
+0.6
+0.2
-0.2
+0.5
-0.5
carbon source
L-Citrulline
+1.1
+0.3
-0.9
+0.1
-0.0
stress
Furfuryl Alcohol 0.0625 vol%
+0.7
-0.4
+0.2
+0.3
+0.5
stress
Cisplatin 0.006 mg/ml
+1.1
+0.6
+0.6
-0.2
-0.5
stress
Thallium(I) acetate 0.008 mg/ml
+1.2
+0.6
+0.3
-0.4
-0.1
lb
LB
+1.1
+0.4
-0.2
+0.3
+0.1
carbon source
acetate (C)
+0.8
-0.2
+0.8
+0.5
+0.3
stress
Thallium(I) acetate 0.016 mg/ml
+1.5
+0.5
+0.4
+0.1
-0.1
stress
Thallium(I) acetate 0.008 mg/ml
+1.6
+0.5
-0.1
+0.3
+0.1
stress
Cisplatin 0.006 mg/ml
+2.7
+0.9
-0.0
-0.1
-0.1
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