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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_28850 and AO353_28855 are separated by 98 nucleotides
AO353_28855 and AO353_28860 are separated by 770 nucleotides
AO353_28860 and AO353_28865 are separated by 25 nucleotides
AO353_28865 and AO353_28870 are separated by 172 nucleotides
AO353_28850: AO353_28850 - LysR family transcriptional regulator, at 6,276,824 to 6,277,765
_28850
AO353_28855: AO353_28855 - MFS transporter, at 6,277,864 to 6,279,072
_28855
AO353_28860: AO353_28860 - hypothetical protein, at 6,279,843 to 6,280,169
_28860
AO353_28865: AO353_28865 - hypothetical protein, at 6,280,195 to 6,280,374
_28865
AO353_28870: AO353_28870 - hypothetical protein, at 6,280,547 to 6,280,735
_28870
Group
Condition
AO353
_28850
AO353
_28855
AO353
_28860
AO353
_28865
AO353
_28870
anaerobic
Anaerobic, acetate donor; nitrate and iron
-1.3
+0.0
+0.2
N.D.
-0.6
stress
Cisplatin 0.006 mg/ml
+0.1
-0.1
-0.7
N.D.
-0.6
stress
Thallium(I) acetate 0.008 mg/ml
-0.1
+0.0
-0.9
N.D.
-0.2
stress
Sisomicin 0.008 mg/ml
+0.0
+0.2
-1.1
N.D.
-0.2
carbon source
L-Ornithine
+0.3
+0.1
-0.7
N.D.
-0.7
nitrogen source
Glycine (N)
-0.2
-0.1
-0.5
N.D.
-0.3
pH
Minimal media pH7
+0.0
-0.0
-0.8
N.D.
-0.2
carbon source
propionate (C)
+0.1
-0.2
-0.8
N.D.
-0.1
stress
Doxycycline hyclate 0.0006 mg/ml
-0.6
+0.0
-0.3
N.D.
+0.0
carbon source
pyruvate (C)
-0.3
-0.1
-0.8
N.D.
+0.3
carbon source
acetate (C)
+0.5
+0.1
-1.2
N.D.
+0.1
carbon source
D-Trehalose (C)
-0.2
+0.0
-0.8
N.D.
+0.4
nitrogen source
Gly-Glu (N)
+0.2
+0.1
-0.8
N.D.
-0.0
carbon source
L-Alanine (C)
+0.3
+0.0
-0.7
N.D.
-0.2
stress
methylglyoxal 0.009 vol%
-0.7
-0.0
-0.2
N.D.
+0.4
carbon source
L-Malic (C)
-0.3
-0.0
-0.4
N.D.
+0.3
nitrogen source
Parabanic Acid (N)
+0.3
-0.0
-0.8
N.D.
+0.1
denitrifying
Nitrate reduction, replicate B
-0.1
-0.0
-0.5
N.D.
+0.3
carbon source
L-Glutamine (C)
+0.1
-0.0
-0.7
N.D.
+0.3
motility
outer cut, LB soft agar motility assay
-0.2
+0.1
-0.7
N.D.
+0.5
pH
Minimal media pH9
-0.0
+0.1
-0.6
N.D.
+0.4
carbon source
L-Citrulline
+0.2
+0.0
+0.3
N.D.
-0.7
motility
outer cut, LB soft agar motility assay
-0.1
+0.3
-0.6
N.D.
+0.5
carbon source
L-Ornithine
+0.3
-0.2
+0.4
N.D.
-0.2
motility
outer cut, LB soft agar motility assay
-0.2
+0.3
+0.8
N.D.
-0.5
stress
1-ethyl-3-methylimidazolium chloride 170 mM
+0.2
-0.0
+0.7
N.D.
-0.1
stress
Cholin acetate 10 mM
+0.1
+0.1
+0.9
N.D.
-0.3
stress
1-ethyl-3-methylimidazolium acetate 30 mM
+0.0
+0.0
+0.9
N.D.
-0.1
nitrogen source
L-tyrosine (N)
+0.2
-0.1
+0.2
N.D.
+0.5
carbon source
L-Ornithine
+0.4
-0.0
+0.6
N.D.
+0.2
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