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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_28670 and AO353_28675 are separated by 775 nucleotides
AO353_28675 and AO353_28680 overlap by 14 nucleotides
AO353_28680 and AO353_28685 are separated by 141 nucleotides
AO353_28685 and AO353_28690 are separated by 478 nucleotides
AO353_28670: AO353_28670 - hypothetical protein, at 6,244,102 to 6,244,341
_28670
AO353_28675: AO353_28675 - hypothetical protein, at 6,245,117 to 6,245,494
_28675
AO353_28680: AO353_28680 - transposase, at 6,245,481 to 6,245,765
_28680
AO353_28685: AO353_28685 - hypothetical protein, at 6,245,907 to 6,246,161
_28685
AO353_28690: AO353_28690 - LysR family transcriptional regulator, at 6,246,640 to 6,247,497
_28690
Group
Condition
AO353
_28670
AO353
_28675
AO353
_28680
AO353
_28685
AO353
_28690
stress
Cisplatin 0.006 mg/ml
-0.8
N.D.
-1.4
-0.0
-0.2
carbon source
L-Ornithine
+0.2
N.D.
-1.9
-0.2
-0.2
carbon source
L-Citrulline
-0.1
N.D.
-1.5
-0.3
-0.3
carbon source
acetate (C)
-1.1
N.D.
-0.3
-0.2
-0.2
carbon source
L-Citrulline
-0.4
N.D.
-0.2
-0.1
-0.4
pH
Minimal media pH9
-0.9
N.D.
-0.5
+0.2
+0.2
denitrifying
Nitrate reduction, replicate B
-0.2
N.D.
-1.1
+0.1
+0.2
temperature
LB 10C
-0.3
N.D.
-0.5
+0.1
-0.1
stress
Rifampicin 0.005 mg/ml
+0.1
N.D.
-0.7
-0.0
-0.3
carbon source
L-Leucine (C)
+0.5
N.D.
-0.9
-0.1
-0.1
pH
Minimal media pH9
-0.5
N.D.
+0.2
-0.3
-0.1
stress
Chloride 500 mM
-0.6
N.D.
-0.3
+0.1
+0.1
carbon source
L-Citrulline (C)
+0.3
N.D.
-0.7
-0.1
+0.1
nitrogen source
Ammonium chloride (N)
+0.4
N.D.
-0.8
-0.0
+0.1
nitrogen source
Urea (N)
+0.5
N.D.
-0.5
-0.1
-0.0
motility
outer cut, LB soft agar motility assay
+0.8
N.D.
-0.8
-0.4
+0.3
survival
4C survival; 672 hrs
-0.5
N.D.
+0.7
-0.2
-0.2
stress
Fusidic 0.125 mg/ml
-0.6
N.D.
+0.8
-0.1
-0.2
carbon source
L-Tryptophan (C)
+0.1
N.D.
+0.4
-0.2
-0.4
nitrogen source
Parabanic Acid (N)
+0.7
N.D.
-0.7
+0.1
-0.1
motility
outer cut, LB soft agar motility assay
-0.1
N.D.
+0.6
-0.1
-0.4
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.6
N.D.
-0.5
-0.0
+0.0
carbon source
L-Valine (C)
+0.8
N.D.
-0.5
+0.1
-0.1
stress
Doxycycline hyclate 0.0006 mg/ml
-1.0
N.D.
+1.4
+0.2
-0.1
stress
sodium fluoride 6.25 mM
+0.3
N.D.
-0.2
+0.3
+0.2
carbon source
L-Citrulline
+1.0
N.D.
+0.6
-0.3
-0.4
stress
1-ethyl-3-methylimidazolium acetate 15 mM
+0.3
N.D.
+0.7
+0.0
-0.1
carbon source
butyrate (C)
+0.7
N.D.
+0.1
+0.0
+0.2
carbon source
D-Serine (C)
+0.6
N.D.
+0.4
+0.1
+0.0
motility
outer cut, LB soft agar motility assay
+0.7
N.D.
+0.8
+0.4
+0.4
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