Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_28670 and AO353_28675 are separated by 775 nucleotidesAO353_28675 and AO353_28680 overlap by 14 nucleotidesAO353_28680 and AO353_28685 are separated by 141 nucleotidesAO353_28685 and AO353_28690 are separated by 478 nucleotides AO353_28670: AO353_28670 - hypothetical protein, at 6,244,102 to 6,244,341 _28670 AO353_28675: AO353_28675 - hypothetical protein, at 6,245,117 to 6,245,494 _28675 AO353_28680: AO353_28680 - transposase, at 6,245,481 to 6,245,765 _28680 AO353_28685: AO353_28685 - hypothetical protein, at 6,245,907 to 6,246,161 _28685 AO353_28690: AO353_28690 - LysR family transcriptional regulator, at 6,246,640 to 6,247,497 _28690
Group Condition AO353_28670 AO353_28675 AO353_28680 AO353_28685 AO353_28690
stress Cisplatin 0.006 mg/ml -0.8 N.D. -1.4 -0.0 -0.2
carbon source L-Ornithine +0.2 N.D. -1.9 -0.2 -0.2
carbon source L-Citrulline -0.1 N.D. -1.5 -0.3 -0.3
carbon source acetate (C) -1.1 N.D. -0.3 -0.2 -0.2
carbon source L-Citrulline -0.4 N.D. -0.2 -0.1 -0.4
pH Minimal media pH9 -0.9 N.D. -0.5 +0.2 +0.2
denitrifying Nitrate reduction, replicate B -0.2 N.D. -1.1 +0.1 +0.2
temperature LB 10C -0.3 N.D. -0.5 +0.1 -0.1
stress Rifampicin 0.005 mg/ml +0.1 N.D. -0.7 -0.0 -0.3
carbon source L-Leucine (C) +0.5 N.D. -0.9 -0.1 -0.1
pH Minimal media pH9 -0.5 N.D. +0.2 -0.3 -0.1
stress Chloride 500 mM -0.6 N.D. -0.3 +0.1 +0.1
carbon source L-Citrulline (C) +0.3 N.D. -0.7 -0.1 +0.1
nitrogen source Ammonium chloride (N) +0.4 N.D. -0.8 -0.0 +0.1
nitrogen source Urea (N) +0.5 N.D. -0.5 -0.1 -0.0
motility outer cut, LB soft agar motility assay +0.8 N.D. -0.8 -0.4 +0.3
survival 4C survival; 672 hrs -0.5 N.D. +0.7 -0.2 -0.2
stress Fusidic 0.125 mg/ml -0.6 N.D. +0.8 -0.1 -0.2
carbon source L-Tryptophan (C) +0.1 N.D. +0.4 -0.2 -0.4
nitrogen source Parabanic Acid (N) +0.7 N.D. -0.7 +0.1 -0.1
motility outer cut, LB soft agar motility assay -0.1 N.D. +0.6 -0.1 -0.4
nitrogen source D-Glucosamine Hydrochloride (N) +0.6 N.D. -0.5 -0.0 +0.0
carbon source L-Valine (C) +0.8 N.D. -0.5 +0.1 -0.1
stress Doxycycline hyclate 0.0006 mg/ml -1.0 N.D. +1.4 +0.2 -0.1
stress sodium fluoride 6.25 mM +0.3 N.D. -0.2 +0.3 +0.2
carbon source L-Citrulline +1.0 N.D. +0.6 -0.3 -0.4
stress 1-ethyl-3-methylimidazolium acetate 15 mM +0.3 N.D. +0.7 +0.0 -0.1
carbon source butyrate (C) +0.7 N.D. +0.1 +0.0 +0.2
carbon source D-Serine (C) +0.6 N.D. +0.4 +0.1 +0.0
motility outer cut, LB soft agar motility assay +0.7 N.D. +0.8 +0.4 +0.4
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