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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_28625 and AO353_28630 are separated by 10 nucleotides
AO353_28630 and AO353_28635 overlap by 10 nucleotides
AO353_28635 and AO353_28640 are separated by 460 nucleotides
AO353_28640 and AO353_28645 are separated by 113 nucleotides
AO353_28625: AO353_28625 - hypothetical protein, at 6,235,628 to 6,236,284
_28625
AO353_28630: AO353_28630 - hypothetical protein, at 6,236,295 to 6,237,515
_28630
AO353_28635: AO353_28635 - hypothetical protein, at 6,237,506 to 6,239,833
_28635
AO353_28640: AO353_28640 - hypothetical protein, at 6,240,294 to 6,240,497
_28640
AO353_28645: AO353_28645 - hypothetical protein, at 6,240,611 to 6,241,567
_28645
Group
Condition
AO353
_28625
AO353
_28630
AO353
_28635
AO353
_28640
AO353
_28645
stress
Nickel (II) chloride 0.625 mM
-0.3
+0.0
+0.0
-1.7
+0.1
carbon source
D-Glucose
-0.0
-0.0
-0.1
-1.3
-0.3
stress
Choline Lysine 12 mM
-0.1
-0.1
+0.1
-0.9
-0.1
carbon source
L-Valine (C)
+0.1
-0.3
-0.0
-0.7
+0.0
carbon source
Fumarate (C)
-0.3
+0.0
-0.0
-0.7
+0.2
stress
Lomefloxacin 0.001 mM
-0.4
+0.2
+0.2
-0.6
+0.1
carbon source
L-Citrulline
+0.5
-0.2
-0.2
-0.4
-0.0
motility
outer cut, LB soft agar motility assay
+0.5
-0.0
+0.2
-1.1
+0.1
nitrogen source
L-Arginine (N)
+0.2
+0.2
+0.1
-0.4
-0.3
denitrifying
Nitrate reduction, replicate C
+0.0
-0.1
+0.1
-0.7
+0.3
stress
sodium fluoride 6.25 mM
-0.5
+0.0
-0.0
-0.1
+0.4
stress
Ceftazidime 0.12 mg/ml
-0.7
+0.1
+0.2
+0.4
-0.1
stress
methylglyoxal 0.009 vol%
+0.5
+0.1
-0.2
-0.3
+0.1
stress
Doxycycline hyclate 0.0002 mg/ml
+0.3
+0.1
-0.0
-0.4
+0.1
carbon source
L-Tryptophan (C)
-0.2
+0.1
-0.1
+0.5
-0.2
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.8
-0.2
+0.1
+0.3
-0.6
carbon source
Putrescine (C)
+0.2
-0.3
+0.2
+0.5
+0.0
motility
outer cut, LB soft agar motility assay
+0.8
+0.1
+0.3
-0.0
-0.4
stress
Tetracycline 0.0016 mg/ml
+0.3
+0.3
-0.0
+0.4
-0.2
stress
Spectinomycin 0.15 mg/ml
+0.2
+0.3
-0.2
+0.3
+0.2
carbon source
L-Histidine (C)
-0.2
+0.3
+0.1
+0.6
+0.0
stress
Thallium(I) acetate 0.008 mg/ml
-0.0
+0.0
-0.0
+0.9
-0.1
carbon source
acetate (C)
-0.2
+0.2
+0.1
+0.4
+0.3
stress
Thallium(I) acetate 0.016 mg/ml
+0.1
-0.0
-0.1
+1.1
-0.1
stress
Thallium(I) acetate 0.008 mg/ml
+0.1
+0.2
-0.1
+0.9
-0.1
stress
Sisomicin 0.008 mg/ml
+0.1
-0.1
+0.3
+0.3
+0.4
temperature
LB 30C
-0.0
+0.1
+0.0
+0.8
+0.2
stress
Doxycycline hyclate 0.0006 mg/ml
+0.3
+0.3
+0.2
+0.2
+0.0
lb
LB
+0.0
+0.1
+0.2
+0.9
+0.1
stress
Cisplatin 0.006 mg/ml
+0.2
+0.4
+0.1
+1.0
-0.1
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AO353_28630
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AO353_28635
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AO353_28640
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AO353_28645
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