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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_28610 and AO353_28615 are separated by 78 nucleotides
AO353_28615 and AO353_28620 are separated by 192 nucleotides
AO353_28620 and AO353_28625 are separated by 203 nucleotides
AO353_28625 and AO353_28630 are separated by 10 nucleotides
AO353_28610: AO353_28610 - lysine transporter LysE, at 6,232,146 to 6,232,766
_28610
AO353_28615: AO353_28615 - MFS transporter, at 6,232,845 to 6,234,371
_28615
AO353_28620: AO353_28620 - LysR family transcriptional regulator, at 6,234,564 to 6,235,424
_28620
AO353_28625: AO353_28625 - hypothetical protein, at 6,235,628 to 6,236,284
_28625
AO353_28630: AO353_28630 - hypothetical protein, at 6,236,295 to 6,237,515
_28630
Group
Condition
AO353
_28610
AO353
_28615
AO353
_28620
AO353
_28625
AO353
_28630
motility
outer cut, LB soft agar motility assay
-0.8
+0.0
-0.1
-0.5
-0.1
stress
Nalidixic 0.004 mg/ml
-0.2
-0.2
-0.4
-0.3
+0.1
stress
copper (II) chloride 2.5 mM
-0.5
+0.1
-0.0
-0.2
-0.3
carbon source
D-Glucose
-0.6
+0.1
-0.3
+0.0
-0.0
stress
Ceftazidime 0.12 mg/ml
+0.1
-0.1
-0.1
-0.7
+0.1
pH
Minimal media pH8
-0.3
-0.2
+0.1
-0.4
+0.2
carbon source
D-Serine (C)
-0.5
-0.1
+0.3
-0.1
-0.2
nitrogen source
L-Citrulline (N)
-0.3
-0.2
-0.1
+0.3
-0.3
carbon source
L-Leucine (C)
-0.5
-0.3
+0.4
-0.0
-0.1
carbon source
L-Valine (C)
-0.5
-0.1
+0.3
+0.1
-0.3
stress
Cisplatin 0.006 mg/ml
-0.3
-0.1
+0.4
-0.2
-0.2
motility
outer cut, LB soft agar motility assay
-0.3
-0.1
-0.8
+0.8
+0.1
carbon source
L-Alanine (C)
-0.4
-0.0
+0.4
-0.3
+0.0
stress
Cisplatin 0.006 mg/ml
-0.1
-0.3
-0.3
+0.2
+0.4
stress
sodium fluoride 6.25 mM
-0.1
+0.0
+0.5
-0.5
+0.0
stress
Doxycycline hyclate 0.0006 mg/ml
-0.2
-0.5
+0.1
+0.3
+0.3
stress
Thallium(I) acetate 0.016 mg/ml
-0.3
-0.3
+0.1
+0.2
+0.3
carbon source
D-Glucose
+0.3
+0.2
-0.4
-0.0
-0.0
nitrogen source
L-tyrosine (N)
-0.2
-0.3
+0.5
+0.2
-0.1
stress
Benzalkonium Chloride 0.012 mg/ml
+0.2
+0.3
-0.5
+0.1
-0.0
survival
4C survival; 360 hrs
+0.2
+0.1
-0.4
+0.0
+0.3
carbon source
L-Citrulline
-0.4
-0.1
+0.5
-0.0
+0.3
radiation
Ionizing radiation, 126.196 Gy,
+0.2
+0.1
+0.3
-0.2
-0.2
nitrogen source
Parabanic Acid (N)
+0.0
-0.4
+0.3
+0.1
+0.3
stress
Chloramphenicol 0.004 mg/ml
-0.3
-0.1
+0.2
+0.2
+0.5
carbon source
L-Ornithine
-0.1
+0.3
-0.2
+0.2
+0.3
carbon source
L-Citrulline
-0.1
-0.0
+0.3
+0.5
-0.2
carbon source
L-Tryptophan (C)
+0.5
-0.0
+0.3
-0.2
+0.1
motility
outer cut, LB soft agar motility assay
+0.1
+0.2
+0.2
+0.5
-0.0
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.3
+0.1
+0.1
+0.8
-0.2
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