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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_28580 and AO353_28585 are separated by 72 nucleotides
AO353_28585 and AO353_28590 are separated by 100 nucleotides
AO353_28590 and AO353_28595 are separated by 304 nucleotides
AO353_28595 and AO353_28600 are separated by 76 nucleotides
AO353_28580: AO353_28580 - histidine kinase, at 6,225,274 to 6,226,662
_28580
AO353_28585: AO353_28585 - LysR family transcriptional regulator, at 6,226,735 to 6,227,634
_28585
AO353_28590: AO353_28590 - oxidoreductase, at 6,227,735 to 6,228,484
_28590
AO353_28595: AO353_28595 - ABC transporter permease, at 6,228,789 to 6,230,000
_28595
AO353_28600: AO353_28600 - hypothetical protein, at 6,230,077 to 6,230,871
_28600
Group
Condition
AO353
_28580
AO353
_28585
AO353
_28590
AO353
_28595
AO353
_28600
stress
Furfuryl Alcohol 0.25 vol%
-0.0
-0.3
-0.4
-0.2
+0.0
stress
1-ethyl-3-methylimidazolium acetate 15 mM
+0.1
-0.3
-0.3
-0.2
-0.0
stress
Cisplatin 0.006 mg/ml
-0.4
+0.1
-0.1
-0.1
-0.2
stress
1-ethyl-3-methylimidazolium acetate 20 mM
+0.1
-0.2
-0.2
-0.1
-0.1
carbon source
L-Isoleucine (C)
+0.2
-0.1
-0.4
-0.1
-0.2
motility
outer cut, LB soft agar motility assay
+0.2
-0.0
-0.7
-0.1
-0.0
carbon source
L-Leucine (C)
-0.3
-0.4
+0.1
+0.0
+0.0
stress
Cholin acetate 19 mM
+0.2
-0.3
-0.2
-0.2
+0.0
carbon source
D-Serine (C)
+0.1
-0.1
-0.5
+0.1
-0.1
stress
methylglyoxal 0.009 vol%
+0.2
-0.2
+0.0
-0.3
-0.2
carbon source
L-Phenylalanine (C)
-0.1
-0.1
+0.2
-0.2
-0.2
stress
Cisplatin 0.006 mg/ml
-0.3
+0.2
+0.2
-0.1
-0.4
carbon source
L-Citrulline
+0.2
+0.0
-0.3
-0.1
-0.1
motility
outer cut, LB soft agar motility assay
+0.3
-0.2
-0.3
+0.1
-0.2
stress
Thallium(I) acetate 0.016 mg/ml
-0.2
-0.1
+0.4
-0.0
-0.0
survival
4C survival; 192 hrs
-0.2
+0.3
-0.2
-0.1
+0.1
stress
Doxycycline hyclate 0.0006 mg/ml
+0.2
+0.5
-0.4
-0.0
-0.3
stress
Chlorite 0.16 mM
+0.1
-0.4
+0.2
+0.1
-0.0
lb
LB
-0.1
+0.3
+0.3
-0.1
-0.2
carbon source
L-Ornithine
-0.0
-0.4
+0.8
-0.1
-0.0
carbon source
L-Citrulline
+0.2
-0.1
+0.3
-0.1
-0.1
carbon source
L-Ornithine
-0.2
+0.3
+0.4
+0.0
-0.1
motility
outer cut, LB soft agar motility assay
+0.0
+0.2
+0.4
+0.2
-0.3
carbon source
L-Ornithine
+0.1
-0.1
+0.6
-0.2
+0.1
carbon source
acetate (C)
+0.1
+0.2
+0.6
-0.2
+0.1
pH
Minimal media pH9
+0.1
+0.0
+0.6
-0.0
+0.1
carbon source
L-Citrulline
+0.0
+0.2
+0.4
+0.2
+0.2
denitrifying
Nitrate reduction, replicate C
+0.3
+0.4
+0.2
+0.2
+0.1
survival
4C survival; 672 hrs
+0.1
+0.7
+0.5
+0.0
+0.1
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.2
+0.6
+0.9
+0.0
+0.2
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