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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_28465 and AO353_28470 are separated by 96 nucleotides
AO353_28470 and AO353_28475 are separated by 82 nucleotides
AO353_28475 and AO353_28480 are separated by 258 nucleotides
AO353_28480 and AO353_28485 are separated by 466 nucleotides
AO353_28465: AO353_28465 - multidrug transporter, at 6,201,871 to 6,202,968
_28465
AO353_28470: AO353_28470 - cupin, at 6,203,065 to 6,203,478
_28470
AO353_28475: AO353_28475 - NmrA family transcriptional regulator, at 6,203,561 to 6,204,322
_28475
AO353_28480: AO353_28480 - CadC-family transcriptional regulator, at 6,204,581 to 6,206,179
_28480
AO353_28485: AO353_28485 - LysR family transcriptional regulator, at 6,206,646 to 6,207,629
_28485
Group
Condition
AO353
_28465
AO353
_28470
AO353
_28475
AO353
_28480
AO353
_28485
stress
Doxycycline hyclate 0.0006 mg/ml
-0.4
-0.2
-0.1
-0.4
-1.5
motility
outer cut, LB soft agar motility assay
-0.0
-0.5
+0.1
-0.3
-1.0
carbon source
L-Citrulline
+0.1
-0.8
-0.3
+0.1
-0.7
stress
Cobalt chloride 0.32 mM
-0.2
-0.2
-0.9
+0.1
-0.2
stress
Tetracycline 0.0016 mg/ml
-0.6
-0.0
-0.7
+0.0
-0.1
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.5
+0.0
-0.5
-0.3
-0.1
stress
methylglyoxal 0.009 vol%
+0.1
-0.5
-0.5
+0.1
-0.5
carbon source
L-Proline (C)
+0.3
-0.1
-0.2
-0.0
-1.1
nitrogen source
L-Glutamic (N)
+0.0
-0.2
-0.1
+0.1
-0.9
stress
Spectinomycin 0.15 mg/ml
-0.5
+0.1
-0.3
-0.1
-0.4
carbon source
L-Lactate (C)
+0.2
-0.2
-0.2
+0.0
-0.7
stress
Fusidic 0.125 mg/ml
-0.5
-0.4
+0.1
+0.1
-0.2
carbon source
L-Citrulline
+0.3
-0.3
-0.3
-0.6
+0.1
carbon source
L-Ornithine
+0.1
-0.1
+0.5
+0.0
-1.2
carbon source
L-Serine (C)
+0.5
+0.3
-0.0
+0.0
-1.5
carbon source
L-Aspartic Acid (C)
+0.2
-0.3
+0.1
+0.1
-0.7
stress
Cholin acetate 19 mM
-0.2
-0.1
-0.7
+0.1
+0.3
carbon source
D-Glucose
+0.0
-0.1
+0.5
-0.2
-0.5
denitrifying
Nitrate reduction, replicate C
+0.1
+0.3
-0.8
+0.1
+0.0
carbon source
L-Citrulline
-0.3
-0.4
-0.3
-0.0
+0.8
carbon source
L-Alanine (C)
+0.3
-0.3
-0.6
-0.1
+0.5
stress
Nickel (II) chloride 0.625 mM
-0.2
+0.2
-0.2
-0.3
+0.5
nitrogen source
Parabanic Acid (N)
+0.0
+0.2
-0.5
-0.2
+0.4
carbon source
acetate (C)
+0.3
-0.1
-0.4
+0.2
+0.6
stress
Polymyxin B sulfate 4 mg/ml
+0.3
+0.2
+0.4
+0.1
-0.4
carbon source
L-Tryptophan (C)
-0.2
+0.4
+0.5
+0.2
-0.2
stress
Thallium(I) acetate 0.008 mg/ml
+0.3
-0.1
+0.5
+0.4
-0.3
stress
Thallium(I) acetate 0.016 mg/ml
+0.4
-0.1
+0.7
+0.2
-0.1
stress
Thallium(I) acetate 0.016 mg/ml
+0.1
+0.1
+0.6
+0.3
+0.4
motility
outer cut, LB soft agar motility assay
+0.3
-0.1
+0.5
+0.3
+0.7
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