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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_28125 and AO353_28130 are separated by 15 nucleotides
AO353_28130 and AO353_28135 overlap by 1 nucleotides
AO353_28135 and AO353_28140 are separated by 5 nucleotides
AO353_28140 and AO353_28145 are separated by 147 nucleotides
AO353_28125: AO353_28125 - succinylglutamate desuccinylase, at 6,131,511 to 6,132,527
_28125
AO353_28130: AO353_28130 - permease, at 6,132,543 to 6,133,556
_28130
AO353_28135: AO353_28135 - nickel permease, at 6,133,556 to 6,134,254
_28135
AO353_28140: AO353_28140 - ABC transporter permease, at 6,134,260 to 6,134,973
_28140
AO353_28145: AO353_28145 - amino acid ABC transporter substrate-binding protein, at 6,135,121 to 6,135,903
_28145
Group
Condition
AO353
_28125
AO353
_28130
AO353
_28135
AO353
_28140
AO353
_28145
carbon source
Uridine (C)
-0.1
-0.2
-0.2
-0.1
-0.3
motility
outer cut, LB soft agar motility assay
+0.0
-0.7
+0.1
+0.1
-0.4
carbon source
L-Citrulline
-0.3
+0.2
-0.4
-0.3
+0.1
stress
Sisomicin 0.008 mg/ml
+0.3
-0.3
-0.1
-0.2
-0.5
stress
Furfuryl Alcohol 0.0625 vol%
-0.3
-0.2
-0.1
-0.2
+0.1
motility
outer cut, LB soft agar motility assay
-0.3
+0.2
+0.1
+0.0
-0.7
denitrifying
Nitrate reduction, replicate B
+0.2
-0.5
-0.1
+0.2
-0.2
carbon source
L-Phenylalanine (C)
+0.0
-0.4
+0.1
+0.1
-0.3
stress
Cisplatin 0.006 mg/ml
-0.3
-0.3
+0.0
-0.1
+0.2
motility
outer cut, LB soft agar motility assay
+0.1
+0.0
+0.1
-0.2
-0.5
carbon source
L-Isoleucine (C)
+0.3
+0.0
-0.0
-0.0
-0.6
carbon source
L-Valine (C)
-0.1
+0.3
-0.3
-0.1
-0.1
stress
Thallium(I) acetate 0.016 mg/ml
+0.2
+0.1
+0.1
-0.2
-0.4
nitrogen source
Gly-Glu (N)
+0.1
-0.2
-0.4
+0.4
-0.2
stress
acetate 68 mM
-0.3
-0.2
-0.0
-0.1
+0.3
stress
Tetracycline 0.0016 mg/ml
-0.1
+0.4
-0.2
-0.3
-0.0
nitrogen source
Adenosine (N)
-0.2
+0.2
-0.1
+0.2
-0.3
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.1
+0.2
-0.2
+0.4
-0.5
nitrogen source
L-Arginine (N)
-0.1
+0.2
-0.1
+0.3
-0.3
carbon source
L-Citrulline (C)
-0.2
+0.3
+0.1
-0.0
-0.3
stress
acetate 34 mM
-0.3
-0.2
+0.2
+0.1
+0.2
stress
Spectinomycin 0.2 mg/ml
+0.1
+0.3
-0.2
-0.1
-0.3
carbon source
L-Citrulline
-0.2
+0.2
+0.3
+0.3
-0.7
carbon source
L-Alanine (C)
+0.5
+0.0
-0.2
-0.4
+0.0
carbon source
acetate (C)
-0.1
-0.3
-0.1
+0.1
+0.4
stress
methylglyoxal 0.009 vol%
-0.2
+0.2
-0.1
-0.2
+0.4
stress
Doxycycline hyclate 0.0006 mg/ml
-0.3
-0.2
+0.1
-0.1
+0.5
stress
nitrate 200 mM
+0.2
-0.1
+0.2
+0.2
-0.2
carbon source
Ethanol (C)
+0.2
+0.3
+0.1
-0.3
-0.1
carbon source
L-Ornithine
+0.3
-0.2
-0.0
-0.3
+0.6
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