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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_27960 and AO353_27965 are separated by 54 nucleotides
AO353_27965 and AO353_27970 are separated by 336 nucleotides
AO353_27970 and AO353_27975 are separated by 93 nucleotides
AO353_27975 and AO353_27980 are separated by 17 nucleotides
AO353_27960: AO353_27960 - SAM-dependent methyltransferase, at 6,098,972 to 6,100,018
_27960
AO353_27965: AO353_27965 - hypothetical protein, at 6,100,073 to 6,100,858
_27965
AO353_27970: AO353_27970 - ABC transporter substrate-binding protein, at 6,101,195 to 6,101,971
_27970
AO353_27975: AO353_27975 - ABC transporter, at 6,102,065 to 6,102,754
_27975
AO353_27980: AO353_27980 - amino acid ABC transporter permease, at 6,102,772 to 6,103,467
_27980
Group
Condition
AO353
_27960
AO353
_27965
AO353
_27970
AO353
_27975
AO353
_27980
carbon source
acetate (C)
-0.1
-1.0
-0.6
+0.1
-0.6
motility
outer cut, LB soft agar motility assay
-0.7
-0.0
-0.8
-0.3
-0.2
carbon source
L-Leucine (C)
-0.6
-0.0
-0.5
-0.3
-0.3
nitrogen source
L-Glutamine (N)
-0.3
-0.2
-0.5
-0.2
-0.2
carbon source
L-Citrulline
-1.0
-0.3
-0.1
-0.2
+0.3
nitrogen source
L-Threonine (N)
-0.3
-0.2
-0.1
-0.5
-0.1
carbon source
L-Alanine (C)
-0.2
+0.1
-0.6
-0.8
+0.3
motility
outer cut, LB soft agar motility assay
+0.2
-0.0
-1.3
+0.2
-0.2
stress
Doxycycline hyclate 0.0006 mg/ml
-0.3
-0.3
-0.6
+0.0
+0.1
carbon source
L-Valine (C)
-0.2
+0.0
-0.7
-0.3
+0.1
carbon source
D-Glucose
+0.7
-0.2
-0.7
-0.6
-0.0
carbon source
L-Citrulline
-0.0
+0.3
-0.3
-0.3
-0.3
carbon source
L-Ornithine
-0.5
+0.4
-0.5
-0.1
-0.0
carbon source
L-Phenylalanine (C)
-0.2
-0.0
+0.3
-0.9
+0.1
carbon source
Ethanol (C)
+0.0
+0.0
+0.2
-0.5
-0.3
motility
outer cut, LB soft agar motility assay
+0.4
-0.0
-0.4
-0.4
-0.2
carbon source
L-Arginine (C)
+0.2
-0.0
+0.2
-0.6
-0.2
carbon source
L-Serine (C)
+0.2
+0.2
+0.1
-0.3
-0.4
nitrogen source
NAG (N)
-0.2
+0.0
+0.3
-0.5
+0.2
stress
Cisplatin 0.006 mg/ml
+0.2
+0.2
+0.1
-0.8
+0.1
pH
Minimal media pH9
+0.4
+0.1
-0.7
+0.3
-0.1
stress
Thallium(I) acetate 0.016 mg/ml
+0.4
+0.4
+0.2
-0.5
-0.2
pH
Minimal media pH9
-0.2
-0.2
+0.1
+0.7
-0.0
stress
Paraquat dichloride 0.032 mg/mL
+0.5
+0.9
-0.5
-0.6
-0.1
stress
Thallium(I) acetate 0.008 mg/ml
+0.1
+0.5
-0.4
+0.0
+0.2
carbon source
L-Ornithine
+0.1
+0.8
+0.3
-0.1
-0.6
denitrifying
Nitrate reduction, replicate C
+0.7
+0.1
-0.2
+0.4
-0.3
stress
Benzethonium chloride 0.025 mM
-0.1
+0.2
+0.4
+0.4
+0.1
carbon source
L-Ornithine
-0.0
+0.8
+0.3
+0.1
+0.0
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.6
+0.3
+0.7
+0.0
+0.3
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