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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_27930 and AO353_27935 are separated by 148 nucleotides
AO353_27935 and AO353_27940 are separated by 35 nucleotides
AO353_27940 and AO353_27945 are separated by 23 nucleotides
AO353_27945 and AO353_27950 overlap by 4 nucleotides
AO353_27930: AO353_27930 - LysR family transcriptional regulator, at 6,093,939 to 6,094,823
_27930
AO353_27935: AO353_27935 - succinyl-CoA--3-ketoacid-CoA transferase, at 6,094,972 to 6,095,670
_27935
AO353_27940: AO353_27940 - succinyl-CoA--3-ketoacid-CoA transferase, at 6,095,706 to 6,096,365
_27940
AO353_27945: AO353_27945 - acetyl-CoA acetyltransferase, at 6,096,389 to 6,097,570
_27945
AO353_27950: AO353_27950 - hypothetical protein, at 6,097,567 to 6,097,878
_27950
Group
Condition
AO353
_27930
AO353
_27935
AO353
_27940
AO353
_27945
AO353
_27950
carbon source
Carnitine Hydrochloride (C)
-2.5
-2.5
-2.1
+0.0
-0.3
carbon source
L-Phenylalanine (C)
-1.5
-0.5
-1.6
-1.3
+0.2
stress
Paraquat dichloride 0.032 mg/mL
-1.0
-0.4
+0.0
-0.6
-1.1
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.3
-0.4
+0.7
+0.2
-3.1
carbon source
L-Leucine (C)
+0.4
-1.3
-1.2
-0.4
+0.2
nitrogen source
Carnitine Hydrochloride (N)
-0.8
-0.5
-0.6
+0.0
+0.0
carbon source
L-Valine (C)
+0.6
+0.1
+0.3
-0.5
-2.4
stress
Furfuryl Alcohol 0.125 vol%
-0.4
-0.4
+0.2
+0.2
-1.3
nitrogen source
L-Serine (N)
-0.4
-0.7
-0.1
+0.1
-0.7
stress
methylglyoxal 0.009 vol%
-0.3
-0.1
+0.5
+0.5
-2.3
stress
syringaldehyde 5 mM
-0.2
-0.1
-0.3
+0.5
-1.5
nitrogen source
L-Threonine (N)
-0.2
+0.2
-0.1
+0.3
-1.6
stress
Cobalt chloride 0.16 mM
-0.3
-0.2
+0.1
+0.2
-1.2
denitrifying
Nitrate reduction, replicate B
-0.5
+0.4
+0.2
-0.2
-1.0
stress
Benzalkonium Chloride 0.012 mg/ml
+0.4
-0.2
+0.2
+0.1
-1.4
carbon source
propionate (C)
+0.1
-0.2
+0.2
+0.4
-1.4
carbon source
L-Isoleucine (C)
+0.6
+0.8
-0.2
-0.4
-1.4
stress
Lomefloxacin 0.001 mM
-0.1
+0.8
-1.2
-0.1
+0.0
stress
Cisplatin 0.006 mg/ml
-0.6
-0.9
+0.0
+0.1
+0.7
carbon source
D-Glucose
-0.5
-0.1
+0.3
+0.5
-0.6
carbon source
L-Malic (C)
+0.2
+0.2
+0.4
+0.1
-1.1
stress
Vanillin 1.25 mM
-0.2
-0.9
+0.2
+0.3
+0.3
motility
outer cut, LB soft agar motility assay
+1.0
-1.4
-0.2
-0.2
+0.7
nitrogen source
L-Phenylalanine (N)
+0.3
+0.7
+0.4
-0.1
-0.5
radiation
Ionizing radiation, 126.196 Gy,
-0.2
-0.1
+0.1
-0.4
+1.5
carbon source
L-Citrulline
-0.5
+0.7
+0.4
+0.6
+0.1
carbon source
L-Citrulline
-0.3
-0.1
-0.0
-0.1
+1.9
carbon source
L-Ornithine
+0.7
+0.2
+0.6
+0.3
-0.3
survival
4C survival; 360 hrs
+0.3
+1.0
+0.8
+0.3
-0.5
survival
4C survival; 672 hrs
+2.1
+3.5
+2.6
+0.3
+0.3
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