Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_27920 and AO353_27925 are separated by 153 nucleotidesAO353_27925 and AO353_27930 are separated by 957 nucleotidesAO353_27930 and AO353_27935 are separated by 148 nucleotidesAO353_27935 and AO353_27940 are separated by 35 nucleotides AO353_27920: AO353_27920 - arginine N-succinyltransferase, at 6,091,461 to 6,092,495 _27920 AO353_27925: AO353_27925 - hypothetical protein, at 6,092,649 to 6,092,981 _27925 AO353_27930: AO353_27930 - LysR family transcriptional regulator, at 6,093,939 to 6,094,823 _27930 AO353_27935: AO353_27935 - succinyl-CoA--3-ketoacid-CoA transferase, at 6,094,972 to 6,095,670 _27935 AO353_27940: AO353_27940 - succinyl-CoA--3-ketoacid-CoA transferase, at 6,095,706 to 6,096,365 _27940
Group Condition AO353_27920 AO353_27925 AO353_27930 AO353_27935 AO353_27940
carbon source Carnitine Hydrochloride (C) +0.1 +0.6 -2.5 -2.5 -2.1
motility outer cut, LB soft agar motility assay -1.6 -3.8 +0.7 -0.3 -0.0
carbon source L-Phenylalanine (C) +0.2 -0.2 -1.5 -0.5 -1.6
stress Paraquat dichloride 0.032 mg/mL -0.3 -0.7 -1.0 -0.4 +0.0
nitrogen source Carnitine Hydrochloride (N) -0.3 +0.1 -0.8 -0.5 -0.6
carbon source L-Leucine (C) -0.3 +0.9 +0.4 -1.3 -1.2
motility outer cut, LB soft agar motility assay -0.3 -0.5 +1.0 -1.4 -0.2
nitrogen source Glycine (N) -0.2 -0.7 -0.2 -0.6 +0.4
stress Thallium(I) acetate 0.008 mg/ml -0.5 -0.9 +0.4 -0.2 -0.1
stress Doxycycline hyclate 0.0006 mg/ml +0.3 -1.4 -0.5 +0.1 +0.2
carbon source D-Ribose (C) -0.3 -1.5 +0.1 +0.2 +0.2
stress 1-ethyl-3-methylimidazolium lysine 10.5 mM +0.4 -1.1 -0.3 -0.4 +0.1
stress copper (II) chloride 2.5 mM -0.2 +0.1 -0.3 -1.1 +0.2
stress Cisplatin 0.006 mg/ml -0.8 +1.1 -0.6 -0.9 +0.0
stress Lomefloxacin 0.001 mM -0.2 -0.1 -0.1 +0.8 -1.2
carbon source L-Citrulline -0.5 -0.8 -0.5 +0.7 +0.4
nitrogen source L-Arginine (N) -0.9 +0.1 +0.4 -0.4 +0.1
carbon source acetate (C) +0.1 -0.9 +0.5 -0.4 +0.1
pH Minimal media pH9 +0.1 +0.6 -0.8 -0.2 -0.2
stress methylglyoxal 0.008 vol% +0.3 -0.7 +0.5 -0.5 +0.2
stress Sisomicin 0.008 mg/ml -0.1 -1.0 +0.4 +0.3 +0.3
anaerobic Anaerobic, acetate donor; nitrate and iron -0.4 +0.4 -0.3 -0.4 +0.7
nitrogen source L-Phenylalanine (N) -0.2 -0.9 +0.3 +0.7 +0.4
carbon source Tween 20 (C) +0.2 -0.8 +0.1 +0.6 +0.3
stress Nalidixic 0.004 mg/ml -0.5 +0.6 -0.3 +0.4 +0.3
motility outer cut, LB soft agar motility assay -0.9 +1.4 -0.2 +0.9 -0.2
survival 4C survival; 360 hrs -0.9 +0.1 +0.3 +1.0 +0.8
carbon source L-Ornithine +0.4 -0.3 +0.7 +0.2 +0.6
carbon source L-Isoleucine (C) -0.2 +0.7 +0.6 +0.8 -0.2
survival 4C survival; 672 hrs -1.6 +0.2 +2.1 +3.5 +2.6
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