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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_27875 and AO353_27880 are separated by 111 nucleotides
AO353_27880 and AO353_27885 are separated by 9 nucleotides
AO353_27885 and AO353_27890 are separated by 258 nucleotides
AO353_27890 and AO353_27895 are separated by 2 nucleotides
AO353_27875: AO353_27875 - exonuclease III, at 6,081,904 to 6,082,716
_27875
AO353_27880: AO353_27880 - hypothetical protein, at 6,082,828 to 6,084,165
_27880
AO353_27885: AO353_27885 - precorrin 6A synthase, at 6,084,175 to 6,084,942
_27885
AO353_27890: AO353_27890 - RpiR family transcriptional regulator, at 6,085,201 to 6,086,055
_27890
AO353_27895: AO353_27895 - isochorismatase, at 6,086,058 to 6,086,702
_27895
Group
Condition
AO353
_27875
AO353
_27880
AO353
_27885
AO353
_27890
AO353
_27895
anaerobic
Anaerobic, acetate donor; nitrate and iron
-1.1
+0.6
-0.3
-0.2
-1.1
stress
Cisplatin 0.006 mg/ml
-0.7
-0.5
-0.1
+0.4
-0.9
stress
Sisomicin 0.008 mg/ml
-0.6
-0.1
-0.1
+0.1
-1.2
stress
Cisplatin 0.006 mg/ml
-0.6
+0.2
+0.1
+0.2
-0.6
motility
outer cut, LB soft agar motility assay
+0.0
-0.4
+0.0
+1.4
-1.2
carbon source
L-Leucine (C)
+0.6
-0.4
-0.3
+0.4
+0.4
motility
outer cut, LB soft agar motility assay
-0.2
-0.2
-0.0
+1.4
-0.2
pH
Minimal media pH7
+0.4
+0.1
-0.3
+0.6
+0.2
survival
4C survival; 360 hrs
+0.2
+0.0
+0.1
+1.2
-0.5
carbon source
L-Isoleucine (C)
+0.2
-0.3
+0.2
+0.6
+0.4
carbon source
L-Asparagine (C)
-0.1
+0.1
+0.3
+1.3
-0.5
stress
Cobalt chloride 0.32 mM
+0.6
-0.0
-0.4
+0.5
+0.5
carbon source
L-Ornithine
-0.1
-0.2
+0.0
+1.2
+0.2
denitrifying
Nitrate reduction, replicate C
+0.1
+0.3
-0.2
+0.5
+0.5
carbon source
L-Phenylalanine (C)
+0.4
+0.4
+0.5
+0.2
-0.2
carbon source
L-Citrulline
+0.2
+0.0
-0.3
+1.2
+0.1
carbon source
L-Ornithine
-0.2
-0.3
+0.5
+1.3
+0.3
carbon source
succinate (C)
+0.2
+0.0
+0.1
+1.0
+0.2
carbon source
D,L-Lactate (C)
+0.5
-0.0
+0.2
+0.9
+0.1
nitrogen source
Gly-DL-Asp (N)
+0.6
+0.4
+0.3
-0.0
+0.4
carbon source
D-Glucose
-0.3
-0.1
+0.2
+1.5
+0.4
carbon source
L-Citrulline
+0.1
+0.0
+0.3
+1.0
+0.2
carbon source
L-Asparagine (C)
+0.0
+0.1
+0.4
+1.3
-0.1
carbon source
L-Ornithine
-0.2
-0.1
+0.6
+1.4
+0.0
carbon source
acetate (C)
+0.4
+0.2
+0.1
+1.4
-0.3
carbon source
L-Citrulline
-0.2
+0.0
+0.2
+0.9
+0.9
carbon source
L-Ornithine
-0.1
+0.1
+0.3
+1.5
+0.4
carbon source
L-Citrulline
-0.0
+0.2
+0.5
+1.3
+0.3
carbon source
acetate (C)
+0.2
+0.3
+0.3
+1.5
+0.4
survival
4C survival; 672 hrs
+0.3
+0.4
+1.1
+4.1
-1.6
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