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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_27475 and AO353_27480 are separated by 23 nucleotides
AO353_27480 and AO353_27485 are separated by 25 nucleotides
AO353_27485 and AO353_27490 are separated by 262 nucleotides
AO353_27490 and AO353_27495 are separated by 212 nucleotides
AO353_27475: AO353_27475 - glutamine synthetase, at 5,996,561 to 5,997,907
_27475
AO353_27480: AO353_27480 - Cro/Cl family transcriptional regulator, at 5,997,931 to 5,998,488
_27480
AO353_27485: AO353_27485 - FAD-dependent oxidoreductase, at 5,998,514 to 5,999,803
_27485
AO353_27490: AO353_27490 - cupin, at 6,000,066 to 6,000,590
_27490
AO353_27495: AO353_27495 - pyridine nucleotide-disulfide oxidoreductase, at 6,000,803 to 6,002,344
_27495
Group
Condition
AO353
_27475
AO353
_27480
AO353
_27485
AO353
_27490
AO353
_27495
stress
Cobalt chloride 0.32 mM
-0.4
-0.6
-0.4
-0.4
-0.2
stress
methylglyoxal 0.009 vol%
-0.0
-0.7
-0.0
-0.5
+0.2
denitrifying
Nitrate reduction, replicate C
-0.2
-0.6
+0.0
-0.4
+0.1
stress
Cobalt chloride 0.32 mM
-0.2
-0.1
-0.6
+0.0
-0.2
motility
outer cut, LB soft agar motility assay
-0.8
-0.4
+0.4
-0.2
-0.0
stress
Rifampicin 0.005 mg/ml
+0.1
-0.8
-0.1
-0.2
+0.2
carbon source
L-Phenylalanine (C)
+0.3
-0.8
+0.0
-0.5
+0.0
stress
copper (II) chloride 2.5 mM
-0.2
-0.9
+0.1
+0.1
+0.2
stress
Doxycycline hyclate 0.0006 mg/ml
+0.2
-0.2
-0.6
-0.2
+0.1
carbon source
L-Citrulline
-0.2
-0.9
+0.0
+0.1
+0.3
carbon source
L-Ornithine
-0.4
-0.6
+0.0
+0.1
+0.4
stress
Cisplatin 0.006 mg/ml
+0.4
-0.4
-0.1
-0.3
+0.0
stress
Sisomicin 0.008 mg/ml
+0.5
-0.3
-0.2
-0.2
-0.1
pH
Minimal media pH6
+0.3
-0.5
-0.0
-0.2
+0.2
denitrifying
Nitrate reduction, replicate B
+0.4
-0.4
-0.1
-0.2
+0.0
nitrogen source
L-Histidine (N)
-0.3
-0.3
-0.0
+0.3
+0.2
carbon source
L-Citrulline
-0.2
+0.2
-0.3
-0.1
+0.2
stress
nitrite 10 mM
-0.6
+0.0
+0.2
+0.2
+0.1
nitrogen source
Inosine (N)
-0.2
+0.2
+0.2
-0.3
+0.3
nitrogen source
L-Phenylalanine (N)
-0.0
+0.2
+0.2
-0.4
+0.2
nitrogen source
L-Citrulline (N)
-0.1
+0.2
-0.3
+0.3
+0.1
carbon source
L-Valine (C)
-0.2
-0.2
+0.1
+0.3
+0.2
carbon source
acetate (C)
-0.4
+0.6
-0.3
+0.3
+0.2
carbon source
L-Citrulline
+0.1
-0.6
+0.5
+0.1
+0.3
carbon source
L-Proline (C)
-0.0
-0.3
+0.5
+0.1
+0.1
lb
LB
+0.4
+0.3
-0.2
+0.1
-0.1
stress
Cholin acetate 38 mM
+0.3
+0.2
-0.2
+0.2
+0.2
motility
outer cut, LB soft agar motility assay
-0.2
+0.4
+0.3
+0.2
-0.0
carbon source
D-Glucose
+0.4
-0.2
+0.1
+0.3
+0.3
motility
outer cut, LB soft agar motility assay
+0.1
+0.9
+0.4
+0.4
+0.2
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