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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_27355 and AO353_27360 are separated by 2 nucleotides
AO353_27360 and AO353_27365 are separated by 2 nucleotides
AO353_27365 and AO353_27370 are separated by 10 nucleotides
AO353_27370 and AO353_27375 are separated by 43 nucleotides
AO353_27355: AO353_27355 - hypothetical protein, at 5,976,275 to 5,977,507
_27355
AO353_27360: AO353_27360 - portal protein, at 5,977,510 to 5,979,120
_27360
AO353_27365: AO353_27365 - hypothetical protein, at 5,979,123 to 5,979,338
_27365
AO353_27370: AO353_27370 - terminase, at 5,979,349 to 5,981,238
_27370
AO353_27375: AO353_27375 - DNA packaging protein, at 5,981,282 to 5,981,806
_27375
Group
Condition
AO353
_27355
AO353
_27360
AO353
_27365
AO353
_27370
AO353
_27375
carbon source
L-Citrulline
-0.3
+0.2
-1.1
-0.3
-0.8
stress
Cobalt chloride 0.32 mM
-0.2
-0.1
-1.2
+0.1
-0.2
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.6
-0.0
-1.0
-0.0
-1.0
stress
Tetracycline 0.0016 mg/ml
-0.1
+0.1
+0.1
-0.0
-1.3
stress
Lomefloxacin 0.001 mM
-0.2
-0.4
-0.1
+0.2
-0.7
stress
Cisplatin 0.006 mg/ml
+0.6
-0.6
-0.1
-0.0
-1.1
motility
outer cut, LB soft agar motility assay
+0.2
-0.3
-0.3
-0.2
-0.6
stress
Sisomicin 0.008 mg/ml
-0.1
-0.1
+0.2
-0.2
-0.8
stress
copper (II) chloride 2.5 mM
+0.3
-0.0
-0.9
+0.1
-0.6
carbon source
L-Ornithine
-0.3
+0.4
-0.5
-0.3
-0.2
carbon source
pyruvate (C)
-0.2
+0.1
-0.5
+0.2
-0.6
carbon source
Uridine (C)
+0.4
-0.1
-0.4
-0.2
-0.6
nitrogen source
Ammonium chloride (N)
+0.4
-0.0
-1.0
+0.1
-0.1
carbon source
L-Citrulline
+0.9
-0.4
-0.8
+0.1
-0.4
stress
Cobalt chloride 0.32 mM
+0.2
+0.1
-0.5
+0.1
-0.5
carbon source
L-Alanine (C)
+0.4
+0.2
-0.5
-0.2
-0.5
nitrogen source
Thymine (N)
+0.3
+0.3
-0.5
+0.0
-0.5
carbon source
L-Phenylalanine (C)
+0.2
-0.2
+0.4
-0.0
-0.7
carbon source
L-Tryptophan (C)
+0.5
-0.4
-0.4
-0.0
+0.1
stress
methylglyoxal 0.008 vol%
+0.1
-0.3
+0.4
+0.2
-0.6
carbon source
L-Citrulline
+0.3
+0.1
-0.6
-0.2
+0.1
stress
Paraquat dichloride 0.032 mg/mL
+0.1
+0.2
+0.4
+0.2
-0.8
carbon source
propionate (C)
-0.3
+0.2
+0.4
+0.2
-0.3
denitrifying
Nitrate reduction, replicate B
-0.2
-0.0
+0.8
-0.3
+0.1
stress
Doxycycline hyclate 0.0006 mg/ml
+0.1
-0.7
+1.2
+0.1
-0.2
stress
Cisplatin 0.006 mg/ml
+0.1
-0.3
+1.1
+0.1
-0.4
lb
LB
+0.4
-0.0
+0.4
+0.3
-0.3
denitrifying
Nitrate reduction, replicate C
-0.5
+0.2
+0.4
+0.1
+0.6
stress
methylglyoxal 0.009 vol%
-0.0
-0.3
+1.1
+0.1
+0.1
carbon source
acetate (C)
+0.1
+0.8
+0.8
+0.2
+0.3
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