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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_27285 and AO353_27290 are separated by 104 nucleotides
AO353_27290 and AO353_27295 are separated by 72 nucleotides
AO353_27295 and AO353_27300 overlap by 4 nucleotides
AO353_27300 and AO353_27305 are separated by 1 nucleotides
AO353_27285: AO353_27285 - phage tail protein, at 5,967,234 to 5,968,400
_27285
AO353_27290: AO353_27290 - phage tail protein, at 5,968,505 to 5,968,897
_27290
AO353_27295: AO353_27295 - phage tail protein, at 5,968,970 to 5,970,502
_27295
AO353_27300: AO353_27300 - phage tail protein, at 5,970,499 to 5,971,104
_27300
AO353_27305: AO353_27305 - baseplate assembly protein, at 5,971,106 to 5,971,987
_27305
Group
Condition
AO353
_27285
AO353
_27290
AO353
_27295
AO353
_27300
AO353
_27305
stress
1-ethyl-3-methylimidazolium chloride 170 mM
-0.3
-0.3
-0.1
-0.8
-0.5
stress
methylglyoxal 0.009 vol%
-0.1
-0.2
+0.1
-0.7
-0.6
stress
nitrate 200 mM
-0.1
+0.0
-0.1
-0.5
-0.6
stress
methylglyoxal 0.008 vol%
-0.2
-0.3
+0.2
-0.8
-0.3
pH
Minimal media pH7
-0.2
+0.0
+0.0
-0.8
-0.1
stress
Paraquat dichloride 0.032 mg/mL
+0.3
-0.6
+0.1
-0.5
-0.4
pH
Minimal media pH8
-0.1
-0.2
+0.2
-0.6
-0.2
stress
acetate 68 mM
-0.2
+0.3
+0.1
-0.8
-0.2
stress
Nickel (II) chloride 0.625 mM
-0.1
+0.1
+0.1
-0.6
-0.3
stress
Thallium(I) acetate 0.008 mg/ml
+0.3
-0.3
+0.1
-0.6
-0.4
stress
Cisplatin 0.006 mg/ml
-0.5
-0.4
-0.2
+0.1
+0.2
carbon source
D-Gluconic Acid (C)
-0.3
+0.3
-0.1
-0.4
-0.2
stress
Rifampicin 0.005 mg/ml
-0.2
+0.1
+0.4
-0.7
-0.2
motility
outer cut, LB soft agar motility assay
+0.4
+0.4
-1.2
+0.0
-0.1
stress
Cholin acetate 38 mM
-0.1
+0.2
-0.1
-0.7
+0.2
carbon source
D-Glucosamine Hydrochloride (C)
+0.2
+0.2
+0.0
-0.6
-0.2
stress
Chlorite 0.16 mM
+0.0
+0.2
-0.1
-0.7
+0.2
carbon source
D-Glucose
+0.2
+0.4
-0.2
-0.6
+0.1
nitrogen source
L-Tryptophan (N)
+0.2
+0.2
+0.1
-0.5
+0.2
carbon source
L-Valine (C)
+0.2
+0.5
-0.2
-0.6
+0.1
carbon source
L-Alanine (C)
+0.4
+0.3
+0.1
-0.2
-0.5
stress
Fusidic 0.125 mg/ml
-0.3
+0.0
-0.2
+0.4
+0.3
carbon source
L-Citrulline
+0.1
+0.6
-0.2
-0.3
+0.2
nitrogen source
Adenosine (N)
+0.2
+0.5
+0.2
-0.4
+0.1
carbon source
L-Citrulline
-0.1
-0.3
+0.0
+0.5
+0.4
stress
Gentamicin 0.006 mg/ml
-0.4
+0.1
-0.1
+0.7
+0.2
carbon source
acetate (C)
-0.3
+0.6
+0.0
+0.4
+0.2
carbon source
acetate (C)
-0.0
-0.2
+0.1
+0.5
+0.7
stress
Lomefloxacin 0.001 mM
-0.1
+0.1
+0.1
+0.7
+0.1
stress
Sisomicin 0.008 mg/ml
-0.2
+0.2
+0.0
+1.1
+0.2
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