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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_27085 and AO353_27090 are separated by 198 nucleotides
AO353_27090 and AO353_27095 are separated by 245 nucleotides
AO353_27095 and AO353_27100 are separated by 528 nucleotides
AO353_27100 and AO353_27105 are separated by 162 nucleotides
AO353_27085: AO353_27085 - hypothetical protein, at 5,934,669 to 5,934,899
_27085
AO353_27090: AO353_27090 - hypothetical protein, at 5,935,098 to 5,935,340
_27090
AO353_27095: AO353_27095 - carbonic anhydrase, at 5,935,586 to 5,936,338
_27095
AO353_27100: AO353_27100 - hypothetical protein, at 5,936,867 to 5,937,295
_27100
AO353_27105: AO353_27105 - diguanylate cyclase, at 5,937,458 to 5,940,061
_27105
Group
Condition
AO353
_27085
AO353
_27090
AO353
_27095
AO353
_27100
AO353
_27105
pH
Minimal media pH9
N.D.
-3.2
-0.0
-0.4
+0.1
stress
Cisplatin 0.006 mg/ml
N.D.
-3.1
-0.0
-0.3
+0.0
carbon source
L-Ornithine
N.D.
-2.0
-0.1
-0.4
-0.1
anaerobic
Anaerobic, acetate donor; nitrate and iron
N.D.
-3.1
+0.2
+0.5
-0.2
stress
Rifampicin 0.005 mg/ml
N.D.
-2.1
-0.0
-0.3
+0.0
carbon source
L-Ornithine
N.D.
-2.3
+0.1
-0.3
+0.1
carbon source
L-Ornithine
N.D.
-1.2
-0.2
-1.1
+0.1
stress
Doxycycline hyclate 0.0006 mg/ml
N.D.
-1.5
-0.1
-0.7
+0.1
carbon source
Tween 20 (C)
N.D.
-1.6
-0.3
-0.1
+0.0
stress
Tetracycline 0.0008 mg/ml
N.D.
-2.0
-0.1
+0.0
+0.1
carbon source
L-Aspartic Acid (C)
N.D.
-1.7
-0.1
-0.1
-0.0
motility
outer cut, LB soft agar motility assay
N.D.
-1.9
+0.1
+0.0
-0.0
motility
outer cut, LB soft agar motility assay
N.D.
-2.4
+0.1
+0.1
+0.4
carbon source
L-Citrulline
N.D.
-0.9
-0.1
-0.8
-0.0
carbon source
L-Ornithine
N.D.
-1.3
+0.1
-0.4
-0.0
stress
Tetracycline 0.0016 mg/ml
N.D.
-1.2
-0.0
-0.2
-0.1
carbon source
D-Glucose
N.D.
-1.3
+0.1
-0.3
+0.0
stress
Vancomycin 1 mg/ml
N.D.
-1.3
+0.1
-0.2
-0.1
carbon source
L-Tryptophan (C)
N.D.
-1.3
-0.2
+0.2
-0.0
stress
Benzalkonium Chloride 0.012 mg/ml
N.D.
-1.4
-0.0
+0.2
-0.1
stress
Thallium(I) acetate 0.008 mg/ml
N.D.
-1.2
+0.1
-0.0
-0.1
carbon source
D-Glucose
N.D.
-0.8
+0.1
-0.4
-0.1
stress
Chloramphenicol 0.004 mg/ml
N.D.
-1.3
+0.1
-0.0
+0.0
anaerobic
N1B4wt with N2E3m denitrifying replicate C
N.D.
-1.2
+0.1
-0.2
+0.1
stress
benzoic 0.58 mg/ml
N.D.
-1.1
+0.0
+0.1
-0.2
carbon source
D-Serine (C)
N.D.
-1.4
-0.0
+0.1
+0.1
stress
Chlorite 0.16 mM
N.D.
-0.7
-0.5
+0.1
-0.1
stress
Lomefloxacin 0.001 mM
N.D.
-1.2
+0.4
-0.1
-0.0
stress
perchlorate 75 mM
N.D.
-0.8
+0.2
+0.2
+0.1
stress
Sisomicin 0.008 mg/ml
N.D.
+0.6
-0.1
+0.7
+0.4
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