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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_26960 and AO353_26965 are separated by 122 nucleotides
AO353_26965 and AO353_26970 are separated by 241 nucleotides
AO353_26970 and AO353_26975 are separated by 130 nucleotides
AO353_26975 and AO353_26980 are separated by 255 nucleotides
AO353_26960: AO353_26960 - alkyl hydroperoxide reductase subunit F, at 5,911,230 to 5,912,792
_26960
AO353_26965: AO353_26965 - alkyl hydroperoxide reductase, at 5,912,915 to 5,913,478
_26965
AO353_26970: AO353_26970 - glutathione reductase, at 5,913,720 to 5,915,078
_26970
AO353_26975: AO353_26975 - UTP--glucose-1-phosphate uridylyltransferase, at 5,915,209 to 5,916,048
_26975
AO353_26980: AO353_26980 - hypothetical protein, at 5,916,304 to 5,916,492
_26980
Group
Condition
AO353
_26960
AO353
_26965
AO353
_26970
AO353
_26975
AO353
_26980
stress
Doxycycline hyclate 0.0006 mg/ml
-0.8
-1.2
-0.1
N.D.
N.D.
stress
methylglyoxal 0.009 vol%
-1.1
-1.2
+0.6
N.D.
N.D.
stress
Furfuryl Alcohol 0.25 vol%
-0.6
-1.0
+0.1
N.D.
N.D.
stress
Fusidic 0.125 mg/ml
-0.5
-0.8
-0.0
N.D.
N.D.
stress
Choline Lysine 12 mM
-0.4
-0.4
-0.4
N.D.
N.D.
stress
Spectinomycin 0.15 mg/ml
-0.6
-0.4
-0.2
N.D.
N.D.
motility
outer cut, LB soft agar motility assay
-0.6
-0.7
+0.2
N.D.
N.D.
carbon source
D-Trehalose (C)
-0.4
-0.3
-0.3
N.D.
N.D.
stress
1-ethyl-3-methylimidazolium lysine 10.5 mM
-0.1
-0.6
-0.2
N.D.
N.D.
stress
1-ethyl-3-methylimidazolium acetate 15 mM
-0.4
-0.4
-0.2
N.D.
N.D.
stress
Chloride 500 mM
-0.3
-0.9
+0.1
N.D.
N.D.
stress
1-ethyl-3-methylimidazolium acetate 20 mM
-0.5
-0.3
-0.2
N.D.
N.D.
stress
1-ethyl-3-methylimidazolium chloride 170 mM
-0.2
-0.4
-0.3
N.D.
N.D.
stress
Spectinomycin 0.2 mg/ml
-0.4
-0.5
-0.1
N.D.
N.D.
stress
1-ethyl-3-methylimidazolium acetate 30 mM
-0.3
-0.3
-0.3
N.D.
N.D.
stress
Cholin acetate 38 mM
-0.2
-0.2
-0.4
N.D.
N.D.
stress
copper (II) chloride 2.5 mM
-0.3
-0.4
-0.2
N.D.
N.D.
stress
Paraquat dichloride 0.032 mg/mL
+0.3
-0.2
-0.9
N.D.
N.D.
stress
D-Cycloserine 0.1 mg/ml
-0.3
-0.7
+0.1
N.D.
N.D.
stress
Lomefloxacin 0.001 mM
-0.4
-0.6
+0.3
N.D.
N.D.
stress
Thallium(I) acetate 0.008 mg/ml
+0.1
-0.3
-0.5
N.D.
N.D.
stress
Sisomicin 0.008 mg/ml
+0.2
-0.3
-0.4
N.D.
N.D.
motility
outer cut, LB soft agar motility assay
-0.5
-1.0
+1.0
N.D.
N.D.
carbon source
L-Ornithine
+0.2
-0.1
-0.6
N.D.
N.D.
stress
methylglyoxal 0.008 vol%
-0.3
-0.3
+0.3
N.D.
N.D.
motility
outer cut, LB soft agar motility assay
+0.4
-0.8
+0.4
N.D.
N.D.
carbon source
L-Citrulline
+0.3
+0.1
-0.5
N.D.
N.D.
carbon source
acetate (C)
+0.3
+0.3
-0.3
N.D.
N.D.
stress
Cisplatin 0.006 mg/ml
+0.2
+0.2
+0.6
N.D.
N.D.
stress
Cisplatin 0.006 mg/ml
+0.5
-0.2
+1.0
N.D.
N.D.
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