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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_26745 and AO353_26750 are separated by 88 nucleotides
AO353_26750 and AO353_26755 are separated by 280 nucleotides
AO353_26755 and AO353_26760 are separated by 390 nucleotides
AO353_26760 and AO353_26765 are separated by 287 nucleotides
AO353_26745: AO353_26745 - MFS transporter, at 5,855,822 to 5,857,444
_26745
AO353_26750: AO353_26750 - serine 3-dehydrogenase, at 5,857,533 to 5,858,966
_26750
AO353_26755: AO353_26755 - hypothetical protein, at 5,859,247 to 5,859,600
_26755
AO353_26760: AO353_26760 - hypothetical protein, at 5,859,991 to 5,860,281
_26760
AO353_26765: AO353_26765 - magnesium-translocating P-type ATPase, at 5,860,569 to 5,863,283
_26765
Group
Condition
AO353
_26745
AO353
_26750
AO353
_26755
AO353
_26760
AO353
_26765
stress
Cisplatin 0.006 mg/ml
+0.1
-0.2
-1.0
N.D.
-0.4
stress
Cobalt chloride 0.16 mM
+0.1
-0.0
-0.6
N.D.
-0.9
motility
outer cut, LB soft agar motility assay
-0.4
+0.3
-1.0
N.D.
-0.2
carbon source
L-Alanine (C)
+0.1
-0.1
-1.1
N.D.
-0.3
stress
Cobalt chloride 0.32 mM
-0.2
-0.0
-0.7
N.D.
-0.3
stress
Cobalt chloride 0.32 mM
-0.2
-0.3
-0.2
N.D.
-0.5
stress
Nickel (II) chloride 0.625 mM
-0.3
-0.1
-0.4
N.D.
-0.3
stress
1-ethyl-3-methylimidazolium acetate 15 mM
-0.4
+0.0
-0.7
N.D.
+0.0
carbon source
L-Aspartic Acid (C)
+0.2
-0.0
-1.1
N.D.
-0.0
stress
acetate 68 mM
-0.4
+0.1
-0.5
N.D.
-0.0
stress
sodium fluoride 6.25 mM
+0.0
-0.1
-1.0
N.D.
+0.2
carbon source
Tween 20 (C)
+0.1
+0.1
-0.8
N.D.
-0.2
carbon source
D-Trehalose (C)
-0.0
-0.1
-0.8
N.D.
+0.1
carbon source
L-Citrulline
-0.1
-0.3
-0.6
N.D.
+0.3
carbon source
L-Histidine (C)
+0.2
+0.0
-0.7
N.D.
-0.1
denitrifying
Nitrate reduction, replicate B
-0.3
+0.3
-0.1
N.D.
-0.4
stress
methylglyoxal 0.009 vol%
-0.2
+0.3
-0.7
N.D.
+0.1
carbon source
L-Citrulline
+0.4
-0.3
-0.4
N.D.
+0.1
carbon source
L-Arginine (C)
+0.2
+0.2
-0.5
N.D.
-0.1
stress
Sisomicin 0.008 mg/ml
+0.1
-0.2
-0.7
N.D.
+0.8
stress
Chloramphenicol 0.0025 mg/ml
+0.2
+0.3
-0.5
N.D.
+0.1
stress
Doxycycline hyclate 0.0006 mg/ml
-0.3
+0.4
-0.3
N.D.
+0.4
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.5
-0.1
+1.0
N.D.
-0.1
denitrifying
Nitrate reduction, replicate C
+0.3
-0.3
+0.6
N.D.
-0.1
nitrogen source
L-Glutamine (N)
+0.1
-0.0
+0.7
N.D.
-0.3
carbon source
L-Isoleucine (C)
+0.3
-0.3
+0.5
N.D.
+0.1
carbon source
propionate (C)
-0.0
-0.2
+0.5
N.D.
+0.4
carbon source
L-Citrulline
+0.3
+0.1
-0.2
N.D.
+0.6
nitrogen source
L-Threonine (N)
+0.1
+0.1
+0.7
N.D.
-0.1
stress
Thallium(I) acetate 0.016 mg/ml
-0.0
+0.2
+0.7
N.D.
+0.3
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