Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_26710 and AO353_26715 are separated by 25 nucleotidesAO353_26715 and AO353_26720 are separated by 14 nucleotidesAO353_26720 and AO353_26725 are separated by 195 nucleotidesAO353_26725 and AO353_26730 are separated by 79 nucleotides AO353_26710: AO353_26710 - citrate-proton symporter, at 5,846,082 to 5,847,386 _26710 AO353_26715: AO353_26715 - molybdenum ABC transporter substrate-binding protein, at 5,847,412 to 5,848,188 _26715 AO353_26720: AO353_26720 - LysR family transcriptional regulator, at 5,848,203 to 5,849,120 _26720 AO353_26725: AO353_26725 - potassium transporter KefB, at 5,849,316 to 5,851,124 _26725 AO353_26730: AO353_26730 - DNA alkylation repair protein, at 5,851,204 to 5,852,307 _26730
Group Condition AO353_26710 AO353_26715 AO353_26720 AO353_26725 AO353_26730
carbon source L-Isoleucine (C) -0.7 -0.2 -0.2 -0.0 -0.1
motility outer cut, LB soft agar motility assay -0.0 -0.1 -0.3 +0.1 -0.5
carbon source L-Leucine (C) +0.1 -0.5 +0.1 -0.1 -0.5
stress Vancomycin 1 mg/ml -0.5 -0.2 -0.2 +0.1 -0.0
carbon source L-Citrulline -0.4 -0.2 +0.2 -0.4 +0.1
stress Thallium(I) acetate 0.008 mg/ml -0.2 -0.4 +0.1 +0.1 -0.2
stress 1-ethyl-3-methylimidazolium lysine 10.5 mM -0.3 +0.2 +0.1 -0.4 -0.0
carbon source L-Citrulline -0.0 +0.1 -0.5 -0.2 +0.2
stress Cisplatin 0.006 mg/ml -0.6 -0.2 +0.3 +0.1 -0.0
pH Minimal media pH9 -0.2 -0.3 +0.2 -0.2 +0.1
carbon source L-Serine (C) -0.5 +0.2 -0.1 +0.1 +0.1
stress Cisplatin 0.006 mg/ml -0.1 -0.2 +0.2 +0.1 -0.4
anaerobic Anaerobic, acetate donor; nitrate and iron -0.2 -0.0 -0.2 -0.3 +0.4
anaerobic N1B4wt with N2E3m denitrifying replicate C -0.3 +0.3 -0.2 -0.2 +0.2
stress 1-ethyl-3-methylimidazolium acetate 30 mM +0.1 +0.1 +0.0 -0.6 +0.2
nitrogen source L-Phenylalanine (N) +0.2 +0.2 -0.2 -0.1 -0.2
denitrifying Nitrate reduction, replicate B -0.3 -0.3 -0.0 +0.5 +0.1
survival 4C survival; 672 hrs +0.4 -0.5 +0.4 +0.0 -0.0
motility outer cut, LB soft agar motility assay +0.3 +0.4 -0.0 +0.1 -0.3
stress Thallium(I) acetate 0.008 mg/ml +0.1 -0.2 +0.3 +0.4 -0.0
carbon source L-Ornithine +0.7 -0.5 +0.0 +0.3 +0.1
stress 1-ethyl-3-methylimidazolium acetate 20 mM +0.0 +0.3 +0.2 -0.2 +0.3
stress Doxycycline hyclate 0.0006 mg/ml +0.2 +0.3 +0.0 +0.5 -0.3
stress Nalidixic 0.004 mg/ml +0.3 +0.2 +0.0 +0.3 +0.2
carbon source L-Citrulline -0.0 -0.0 +0.4 +0.0 +0.7
denitrifying Nitrate reduction, replicate C +0.1 +0.4 +0.2 +0.4 -0.1
carbon source D-Glucose +0.1 +0.4 -0.1 +0.4 +0.3
carbon source acetate (C) +0.2 +0.7 +0.3 +0.1 -0.3
stress 1-ethyl-3-methylimidazolium chloride 170 mM +0.4 +0.5 +0.0 +0.1 +0.2
stress Doxycycline hyclate 0.0002 mg/ml +0.2 +0.9 +0.1 +0.1 +0.2
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