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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_26575 and AO353_26580 are separated by 0 nucleotides
AO353_26580 and AO353_26585 are separated by 122 nucleotides
AO353_26585 and AO353_26590 are separated by 125 nucleotides
AO353_26590 and AO353_26595 are separated by 3 nucleotides
AO353_26575: AO353_26575 - dihydropyrimidine dehydrogenase, at 5,819,582 to 5,820,949
_26575
AO353_26580: AO353_26580 - Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2)
(from data)
, at 5,820,950 to 5,822,224
_26580
AO353_26585: AO353_26585 - TetR family transcriptional regulator, at 5,822,347 to 5,822,967
_26585
AO353_26590: AO353_26590 - hypothetical protein, at 5,823,093 to 5,823,458
_26590
AO353_26595: AO353_26595 - copper resistance protein CopD, at 5,823,462 to 5,824,340
_26595
Group
Condition
AO353
_26575
AO353
_26580
AO353
_26585
AO353
_26590
AO353
_26595
nitrogen source
Uridine (N)
-3.5
-5.0
-0.1
-0.2
-0.2
motility
outer cut, LB soft agar motility assay
-0.3
-0.1
-0.5
-0.5
-2.7
carbon source
L-Citrulline
-0.0
-0.6
-0.4
-0.4
-1.3
stress
Doxycycline hyclate 0.0006 mg/ml
-0.1
+0.3
-0.0
-0.2
-2.5
motility
outer cut, LB soft agar motility assay
-0.2
-0.0
-0.1
+0.0
-1.9
carbon source
a-Ketoglutaric (C)
-0.2
-0.1
-0.4
-0.3
-1.0
motility
outer cut, LB soft agar motility assay
-0.1
-0.6
-1.0
+0.1
+0.1
carbon source
L-Ornithine
-0.0
-0.2
+0.1
-0.2
-1.0
carbon source
L-Ornithine
-0.8
-0.6
+0.2
-0.1
+0.1
anaerobic
N1B4wt with N2E3m denitrifying replicate C
+0.4
-0.1
+0.1
-0.0
-1.5
stress
A22 0.002 mg/ml
-0.6
+0.1
+0.1
-0.1
-0.6
carbon source
D-Glucose
+0.2
-0.5
-0.0
-0.0
-0.7
carbon source
L-Ornithine
+0.4
+0.0
+0.2
-0.4
-1.0
lb
LB
+0.4
-0.3
-0.1
-0.3
-0.5
nitrogen source
Urea (N)
-0.3
-0.2
-0.2
+0.4
-0.5
denitrifying
Nitrate reduction, replicate B
-0.3
-0.3
+0.3
-0.5
+0.0
stress
Cholin acetate 38 mM
-0.5
-0.2
+0.2
+0.3
-0.2
stress
1-ethyl-3-methylimidazolium chloride 170 mM
+0.2
-0.1
+0.2
+0.0
-0.7
stress
Cholin acetate 19 mM
+0.3
-0.1
+0.2
+0.2
-1.1
stress
syringaldehyde 5 mM
+0.2
+0.2
-0.0
+0.1
-0.8
carbon source
L-Citrulline
-0.5
-0.4
-0.0
+0.4
+0.3
stress
Gentamicin 0.006 mg/ml
+0.1
+0.1
+0.3
-0.3
-0.5
survival
4C survival; 672 hrs
+0.3
-0.1
-0.2
+0.5
-0.4
stress
Choline chloride 268.5 mM
+0.2
-0.1
+0.2
+0.3
-0.4
carbon source
L-Valine (C)
+0.5
-0.4
-0.0
+0.4
-0.3
stress
Spectinomycin 0.2 mg/ml
-0.6
-0.1
+0.4
+0.3
+0.3
stress
Rifampicin 0.005 mg/ml
-0.0
+0.2
+0.4
+0.2
-0.5
carbon source
propionate (C)
-0.4
+0.3
-0.0
+0.1
+0.5
stress
Tetracycline 0.0008 mg/ml
-0.3
+0.3
+0.0
+0.2
+0.7
stress
Cisplatin 0.006 mg/ml
-0.1
+0.0
+0.1
+0.6
+0.5
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