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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_26565 and AO353_26570 are separated by 622 nucleotides
AO353_26570 and AO353_26575 are separated by 230 nucleotides
AO353_26575 and AO353_26580 are separated by 0 nucleotides
AO353_26580 and AO353_26585 are separated by 122 nucleotides
AO353_26565: AO353_26565 - nitrate reductase, at 5,815,802 to 5,817,289
_26565
AO353_26570: AO353_26570 - Dihydropyrimidinase (EC 3.5.2.2)
(from data)
, at 5,817,912 to 5,819,351
_26570
AO353_26575: AO353_26575 - dihydropyrimidine dehydrogenase, at 5,819,582 to 5,820,949
_26575
AO353_26580: AO353_26580 - Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2)
(from data)
, at 5,820,950 to 5,822,224
_26580
AO353_26585: AO353_26585 - TetR family transcriptional regulator, at 5,822,347 to 5,822,967
_26585
Group
Condition
AO353
_26565
AO353
_26570
AO353
_26575
AO353
_26580
AO353
_26585
nitrogen source
Uridine (N)
-3.7
-3.7
-3.5
-5.0
-0.1
nitrogen source
Thymine (N)
-3.1
-4.6
+0.2
-0.1
-0.1
motility
outer cut, LB soft agar motility assay
-0.5
+0.2
-0.3
-0.1
-0.5
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.2
-1.2
-0.2
+0.2
+0.2
carbon source
L-Ornithine
+0.4
-0.2
-0.8
-0.6
+0.2
nitrogen source
Parabanic Acid (N)
-0.1
-0.6
-0.3
+0.2
-0.3
carbon source
L-Citrulline
+0.4
-0.1
-0.0
-0.6
-0.4
nitrogen source
NAG (N)
+0.1
+0.1
-0.0
-0.3
-0.7
motility
outer cut, LB soft agar motility assay
+0.8
+0.4
-0.1
-0.6
-1.0
carbon source
L-Asparagine (C)
-0.1
-0.4
-0.4
+0.2
+0.3
stress
Cholin acetate 38 mM
-0.2
+0.4
-0.5
-0.2
+0.2
carbon source
L-Citrulline
+0.3
+0.6
-0.5
-0.4
-0.0
denitrifying
Nitrate reduction, replicate B
+0.3
-0.1
-0.3
-0.3
+0.3
carbon source
L-Valine (C)
-0.2
+0.2
+0.5
-0.4
-0.0
carbon source
L-Citrulline
-0.4
+0.7
-0.1
+0.2
-0.4
carbon source
Putrescine (C)
+0.5
-0.5
+0.2
-0.1
-0.0
stress
acetate 34 mM
+0.2
+0.3
-0.3
-0.2
+0.1
stress
Thallium(I) acetate 0.016 mg/ml
-0.4
+0.2
+0.6
-0.0
-0.1
carbon source
D-Glucose
+0.3
+0.3
+0.2
-0.5
-0.0
stress
Spectinomycin 0.2 mg/ml
+0.4
+0.3
-0.6
-0.1
+0.4
stress
Thallium(I) acetate 0.016 mg/ml
-0.2
+0.4
+0.4
-0.3
-0.1
carbon source
propionate (C)
+0.3
+0.2
-0.4
+0.3
-0.0
carbon source
L-Leucine (C)
+0.6
-0.2
+0.3
-0.0
-0.1
carbon source
D-Glucose
+0.6
+0.3
+0.2
-0.4
-0.1
carbon source
L-Tryptophan (C)
+0.0
+0.9
-0.0
-0.1
-0.1
stress
Furfuryl Alcohol 0.125 vol%
-0.1
+0.2
+0.5
+0.2
-0.2
stress
Sisomicin 0.008 mg/ml
+0.3
-0.2
+0.4
+0.2
+0.1
stress
Rifampicin 0.005 mg/ml
+0.6
-0.1
-0.0
+0.2
+0.4
stress
Spectinomycin 0.15 mg/ml
+0.1
+0.4
+0.4
+0.1
+0.2
stress
Lomefloxacin 0.001 mM
+0.7
+0.4
+0.4
+0.3
-0.0
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