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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_26250 and AO353_26255 overlap by 4 nucleotides
AO353_26255 and AO353_26260 are separated by 1 nucleotides
AO353_26260 and AO353_26270 are separated by 560 nucleotides
AO353_26270 and AO353_26275 are separated by 246 nucleotides
AO353_26250: AO353_26250 - hypothetical protein, at 5,770,790 to 5,772,205
_26250
AO353_26255: AO353_26255 - terminase, at 5,772,202 to 5,773,689
_26255
AO353_26260: AO353_26260 - hypothetical protein, at 5,773,691 to 5,774,215
_26260
AO353_26270: AO353_26270 - hypothetical protein, at 5,774,776 to 5,775,030
_26270
AO353_26275: AO353_26275 - hypothetical protein, at 5,775,277 to 5,775,537
_26275
Group
Condition
AO353
_26250
AO353
_26255
AO353
_26260
AO353
_26270
AO353
_26275
carbon source
L-Citrulline
+0.4
-0.1
+0.0
N.D.
-1.1
stress
Cobalt chloride 0.32 mM
+0.2
-0.3
-0.2
N.D.
-0.6
stress
copper (II) chloride 2.5 mM
-0.3
-0.2
+0.1
N.D.
-0.4
stress
Thallium(I) acetate 0.016 mg/ml
-0.2
-0.1
-0.5
N.D.
+0.3
stress
Nickel (II) chloride 0.625 mM
-0.2
-0.2
+0.2
N.D.
-0.4
carbon source
propionate (C)
+0.3
-0.1
+0.1
N.D.
-0.8
stress
Cholin acetate 19 mM
+0.3
+0.1
-0.3
N.D.
-0.4
pH
Minimal media pH9
+0.1
-0.2
-0.5
N.D.
+0.4
carbon source
acetate (C)
+0.5
-0.3
+0.3
N.D.
-0.7
stress
methylglyoxal 0.009 vol%
+0.3
+0.2
-0.2
N.D.
-0.2
carbon source
propionate (C)
+0.2
-0.3
+0.4
N.D.
-0.2
carbon source
L-Ornithine
+0.3
-0.0
+0.4
N.D.
-0.4
carbon source
acetate (C)
+0.4
-0.2
+0.5
N.D.
-0.4
carbon source
L-Ornithine
+0.1
-0.2
+0.8
N.D.
-0.2
carbon source
Putrescine (C)
+0.2
-0.1
+0.5
N.D.
-0.2
carbon source
L-Tryptophan (C)
+0.1
+0.3
+0.4
N.D.
-0.3
nitrogen source
L-Glutamic (N)
-0.2
-0.0
+0.3
N.D.
+0.6
stress
Sisomicin 0.008 mg/ml
+0.0
-0.2
+0.4
N.D.
+0.4
motility
outer cut, LB soft agar motility assay
-0.3
+0.2
+0.7
N.D.
+0.1
survival
4C survival; 672 hrs
+0.4
+0.1
+0.6
N.D.
-0.3
motility
outer cut, LB soft agar motility assay
-0.2
-0.1
+0.6
N.D.
+0.5
nitrogen source
Adenosine (N)
+0.2
-0.1
+0.5
N.D.
+0.2
denitrifying
Nitrate reduction, replicate B
+0.3
-0.1
+0.5
N.D.
+0.1
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.4
+0.3
+0.5
N.D.
-0.3
carbon source
L-Ornithine
+0.4
+0.1
+0.9
N.D.
-0.1
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.1
+0.1
+0.4
N.D.
+0.6
stress
Cisplatin 0.006 mg/ml
+0.6
+0.2
-0.0
N.D.
+0.4
carbon source
L-Serine (C)
+0.4
-0.1
+1.0
N.D.
-0.0
carbon source
D-Glucose
+0.3
+0.1
+0.4
N.D.
+0.5
motility
outer cut, LB soft agar motility assay
+0.3
+0.3
+0.6
N.D.
+0.3
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