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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_26135 and AO353_26140 are separated by 42 nucleotides
AO353_26140 and AO353_26145 are separated by 93 nucleotides
AO353_26145 and AO353_26150 are separated by 508 nucleotides
AO353_26150 and AO353_26155 are separated by 126 nucleotides
AO353_26135: AO353_26135 - phage tail protein, at 5,753,448 to 5,754,056
_26135
AO353_26140: AO353_26140 - hypothetical protein, at 5,754,099 to 5,754,521
_26140
AO353_26145: AO353_26145 - NIPSNAP family containing protein, at 5,754,615 to 5,754,959
_26145
AO353_26150: AO353_26150 - hypothetical protein, at 5,755,468 to 5,756,481
_26150
AO353_26155: AO353_26155 - hypothetical protein, at 5,756,608 to 5,756,877
_26155
Group
Condition
AO353
_26135
AO353
_26140
AO353
_26145
AO353
_26150
AO353
_26155
carbon source
L-Ornithine
-0.5
-0.5
-0.2
+0.4
-0.8
denitrifying
Nitrate reduction, replicate C
-0.5
-0.2
-0.5
-0.2
+0.0
carbon source
acetate (C)
-0.3
+0.1
-0.9
-0.2
-0.0
carbon source
L-Ornithine
-0.3
+0.2
-0.7
+0.0
-0.5
stress
Cisplatin 0.006 mg/ml
-1.0
-0.2
-0.1
+0.3
-0.2
carbon source
Tween 20 (C)
-0.3
-0.0
-0.3
-0.0
-0.5
nitrogen source
nitrite (N)
-0.1
-0.2
-0.4
+0.2
-0.6
stress
Thallium(I) acetate 0.008 mg/ml
-0.7
-0.2
-0.1
+0.0
+0.1
lb
LB
-0.4
-0.3
-0.4
+0.1
+0.1
motility
outer cut, LB soft agar motility assay
+0.2
-0.1
-0.7
+0.1
-0.4
carbon source
m-Inositol (C)
-0.4
+0.2
-0.4
-0.1
-0.1
carbon source
L-Tryptophan (C)
-0.1
-0.4
-0.4
+0.1
+0.1
stress
1-ethyl-3-methylimidazolium acetate 15 mM
+0.2
+0.0
-0.2
+0.1
-0.7
carbon source
L-Citrulline
+0.2
-0.2
-0.7
-0.1
+0.2
stress
methylglyoxal 0.009 vol%
+0.1
-0.4
+0.4
-0.2
-0.4
carbon source
L-Aspartic Acid (C)
-0.3
-0.1
-0.4
+0.3
+0.0
nitrogen source
Parabanic Acid (N)
-0.1
-0.2
-0.7
+0.1
+0.3
stress
Thallium(I) acetate 0.016 mg/ml
-0.3
-0.2
+0.1
+0.3
-0.3
motility
outer cut, LB soft agar motility assay
+0.9
+0.0
-0.8
-0.1
-0.4
stress
Ceftazidime 0.12 mg/ml
-0.5
+0.1
+0.2
+0.2
-0.2
carbon source
L-Citrulline
+0.2
-0.2
+0.2
+0.2
-0.4
stress
Cobalt chloride 0.32 mM
+0.2
+0.2
+0.2
-0.0
-0.7
carbon source
Ethanol (C)
-0.2
+0.1
-0.4
+0.3
+0.1
denitrifying
Nitrate reduction, replicate B
-0.3
-0.3
+0.3
-0.2
+0.4
stress
Cholin acetate 10 mM
+0.2
+0.1
+0.4
+0.1
-0.5
lb
LB
+0.3
+0.2
+0.3
-0.1
-0.4
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.1
-0.2
-0.4
+0.2
+0.6
stress
Cholin acetate 38 mM
+0.0
+0.2
+0.3
+0.3
-0.3
stress
Sisomicin 0.008 mg/ml
+0.8
+0.4
+0.3
+0.4
-0.3
stress
Doxycycline hyclate 0.0006 mg/ml
+0.9
+0.5
+0.6
-0.3
+0.5
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