Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_25880 and AO353_25885 are separated by 129 nucleotidesAO353_25885 and AO353_25890 are separated by 10 nucleotidesAO353_25890 and AO353_25895 are separated by 35 nucleotidesAO353_25895 and AO353_25900 are separated by 15 nucleotides AO353_25880: AO353_25880 - sugar ABC transporter substrate-binding protein, at 5,707,204 to 5,708,514 _25880 AO353_25885: AO353_25885 - sugar ABC transporter permease, at 5,708,644 to 5,709,570 _25885 AO353_25890: AO353_25890 - sugar ABC transporter permease, at 5,709,581 to 5,710,411 _25890 AO353_25895: AO353_25895 - ABC transporter ATP-binding protein, at 5,710,447 to 5,711,550 _25895 AO353_25900: AO353_25900 - mannitol dehydrogenase, at 5,711,566 to 5,713,041 _25900
Group Condition AO353_25880 AO353_25885 AO353_25890 AO353_25895 AO353_25900
carbon source D-Mannose (C) -3.1 -2.2 -2.2 -3.6 -2.4
carbon source acetate (C) -0.1 -1.1 -0.1 -0.4 -0.6
carbon source D-Alanine (C) +0.1 -1.3 +0.0 -0.4 -0.2
nitrogen source Glycine (N) -0.1 -0.5 +0.1 -0.6 -0.4
nitrogen source L-Histidine (N) -0.2 -0.7 -0.3 -0.1 -0.2
stress Tetracycline 0.0016 mg/ml -0.1 -0.5 -0.1 -0.4 -0.2
carbon source L-Isoleucine (C) +0.1 -0.1 -0.6 -0.1 -0.6
carbon source L-Alanine (C) +0.1 -0.9 -0.4 -0.1 +0.1
carbon source L-Valine (C) +0.1 -0.8 -0.4 -0.2 +0.2
carbon source L-Leucine (C) +0.2 -0.6 -0.0 -0.2 -0.4
pH Minimal media pH9 +0.0 -0.4 -0.2 +0.3 -0.4
denitrifying Nitrate reduction, replicate C -0.1 -0.1 +0.4 -0.0 -0.8
anaerobic Anaerobic, acetate donor; nitrate and iron -0.3 -0.2 -0.4 +0.5 -0.2
stress Cisplatin 0.006 mg/ml +0.1 -0.3 -0.3 -0.3 +0.3
pH Minimal media pH9 -0.1 +0.7 -0.4 -0.1 -0.5
stress Sisomicin 0.008 mg/ml -0.0 -0.7 +0.0 +0.5 -0.2
carbon source Tween 20 (C) -0.1 -0.7 -0.1 +0.5 +0.0
carbon source D-Serine (C) +0.1 -0.9 +0.2 +0.1 +0.1
motility outer cut, LB soft agar motility assay +0.1 +0.3 -0.7 -0.4 +0.4
stress Doxycycline hyclate 0.0006 mg/ml +0.3 -0.7 +0.2 +0.3 -0.3
carbon source D-Glucose -0.1 +0.3 -0.2 -0.6 +0.6
stress perchlorate 75 mM +0.2 -0.6 +0.3 +0.3 -0.1
motility outer cut, LB soft agar motility assay -0.1 -0.3 -0.5 +0.6 +0.5
stress methylglyoxal 0.009 vol% -0.2 +0.8 -0.7 +0.3 +0.0
carbon source L-Ornithine -0.1 -0.6 +0.0 +0.6 +1.0
carbon source D-Glucose -0.2 +0.2 -0.3 +0.3 +0.9
survival 4C survival; 360 hrs -0.0 +0.8 -0.2 +0.4 +0.1
carbon source L-Ornithine -0.1 -0.5 -0.1 +0.8 +1.2
carbon source D-Fructose (C) +0.0 +0.0 -0.2 +0.0 +1.9
carbon source D-Fructose (C) +0.1 -0.0 +0.2 +0.1 +1.4
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