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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_25520 and AO353_25525 overlap by 4 nucleotides
AO353_25525 and AO353_25530 are separated by 358 nucleotides
AO353_25530 and AO353_25535 are separated by 5 nucleotides
AO353_25535 and AO353_25540 overlap by 4 nucleotides
AO353_25520: AO353_25520 - iron ABC transporter permease, at 5,628,374 to 5,629,987
_25520
AO353_25525: AO353_25525 - sugar ABC transporter, at 5,629,984 to 5,631,090
_25525
AO353_25530: AO353_25530 - UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase, at 5,631,449 to 5,632,588
_25530
AO353_25535: AO353_25535 - UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 5,632,594 to 5,633,613
_25535
AO353_25540: AO353_25540 - UDP-4-amino-4-deoxy-L-arabinose formyltransferase, at 5,633,610 to 5,635,601
_25540
Group
Condition
AO353
_25520
AO353
_25525
AO353
_25530
AO353
_25535
AO353
_25540
carbon source
D-Trehalose (C)
-0.5
-1.4
-0.8
N.D.
N.D.
stress
Lomefloxacin 0.001 mM
-0.3
-0.9
-1.3
N.D.
N.D.
stress
Benzethonium chloride 0.025 mM
-0.3
-0.6
-1.0
N.D.
N.D.
stress
Benzalkonium Chloride 0.01 mg/ml
-0.2
-0.6
-0.9
N.D.
N.D.
stress
Polymyxin B sulfate 4 mg/ml
-0.1
-0.3
-1.3
N.D.
N.D.
stress
methylglyoxal 0.009 vol%
-0.3
-0.5
-0.7
N.D.
N.D.
stress
Nalidixic 0.004 mg/ml
-0.1
-0.5
-0.8
N.D.
N.D.
stress
Spectinomycin 0.15 mg/ml
-0.1
-0.2
-1.1
N.D.
N.D.
stress
Gentamicin 0.006 mg/ml
-0.2
-0.5
-0.6
N.D.
N.D.
stress
Nickel (II) chloride 0.625 mM
-0.3
-0.3
-0.8
N.D.
N.D.
stress
Doxycycline hyclate 0.0006 mg/ml
-0.1
-0.4
-0.8
N.D.
N.D.
carbon source
propionate (C)
+0.3
-1.1
-0.5
N.D.
N.D.
stress
Tetracycline 0.0016 mg/ml
-0.0
-0.1
-1.1
N.D.
N.D.
stress
Vancomycin 1 mg/ml
-0.3
-0.1
-0.9
N.D.
N.D.
stress
Tetracycline 0.0008 mg/ml
-0.1
-0.0
-1.1
N.D.
N.D.
carbon source
L-Alanine (C)
-0.3
-0.6
-0.2
N.D.
N.D.
stress
Ceftazidime 0.12 mg/ml
-0.1
-0.1
-0.9
N.D.
N.D.
carbon source
L-Citrulline (C)
-0.3
-0.7
-0.1
N.D.
N.D.
carbon source
D-Trehalose (C)
-0.6
-0.3
-0.2
N.D.
N.D.
stress
copper (II) chloride 2.5 mM
+0.0
-0.4
-0.7
N.D.
N.D.
carbon source
m-Inositol (C)
-0.5
+0.2
-0.7
N.D.
N.D.
stress
methylglyoxal 0.008 vol%
+0.1
-0.5
-0.6
N.D.
N.D.
carbon source
L-Phenylalanine (C)
-0.3
-0.7
+0.1
N.D.
N.D.
stress
Benzalkonium Chloride 0.012 mg/ml
-0.2
+0.2
-0.8
N.D.
N.D.
stress
Thallium(I) acetate 0.008 mg/ml
+0.3
-0.5
-0.7
N.D.
N.D.
stress
Furfuryl Alcohol 0.25 vol%
-0.3
+0.3
-0.4
N.D.
N.D.
carbon source
D-Glucose
-0.3
-0.7
+0.6
N.D.
N.D.
pH
Minimal media pH9
+0.1
+0.3
-0.6
N.D.
N.D.
carbon source
L-Ornithine
+0.1
-0.6
+0.4
N.D.
N.D.
carbon source
L-Citrulline
-0.2
-0.3
+0.7
N.D.
N.D.
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