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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_25280 and AO353_25285 are separated by 151 nucleotides
AO353_25285 and AO353_25290 overlap by 4 nucleotides
AO353_25290 and AO353_25295 are separated by 3 nucleotides
AO353_25295 and AO353_25300 are separated by 789 nucleotides
AO353_25280: AO353_25280 - gamma-glutamyltransferase, at 5,576,496 to 5,578,106
_25280
AO353_25285: AO353_25285 - transglutaminase, at 5,578,258 to 5,579,055
_25285
AO353_25290: AO353_25290 - hypothetical protein, at 5,579,052 to 5,580,002
_25290
AO353_25295: AO353_25295 - hypothetical protein, at 5,580,006 to 5,581,415
_25295
AO353_25300: AO353_25300 - LysR family transcriptional regulator, at 5,582,205 to 5,583,119
_25300
Group
Condition
AO353
_25280
AO353
_25285
AO353
_25290
AO353
_25295
AO353
_25300
carbon source
L-Histidine (C)
-0.2
-0.4
+0.0
-0.1
-0.7
stress
Cisplatin 0.006 mg/ml
-0.2
+0.4
-0.2
-0.2
-0.9
stress
Lomefloxacin 0.001 mM
+0.2
-1.0
+0.1
-0.3
-0.1
motility
outer cut, LB soft agar motility assay
+0.2
-0.6
-1.0
+0.2
+0.3
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.7
+0.7
-0.5
-0.3
+0.2
lb
LB
+0.2
-0.3
+0.2
-0.1
-0.4
stress
Cisplatin 0.006 mg/ml
+0.1
+0.5
-0.1
+0.1
-0.9
carbon source
L-Glutamic (C)
-0.3
-0.3
-0.0
-0.1
+0.5
stress
acetate 17 mM
+0.2
-0.5
+0.4
-0.3
-0.1
stress
Vanillin 1.25 mM
+0.4
+0.2
-0.1
-0.1
-0.6
survival
4C survival; 192 hrs
-0.1
-0.4
+0.3
-0.1
+0.4
carbon source
L-Citrulline
+0.3
-0.5
-0.7
+0.3
+0.8
stress
Paraquat dichloride 0.032 mg/mL
-0.6
+0.3
+0.1
+0.1
+0.2
denitrifying
Nitrate reduction, replicate B
-0.7
+0.1
+0.4
-0.2
+0.6
stress
1-ethyl-3-methylimidazolium lysine 10.5 mM
+0.4
-0.3
+0.4
-0.0
-0.2
stress
syringaldehyde 5 mM
+0.4
-0.3
+0.3
-0.0
-0.2
stress
acetate 34 mM
+0.5
-0.3
+0.4
-0.0
-0.0
carbon source
L-Ornithine
-0.2
-0.3
+0.3
+0.1
+0.6
carbon source
propionate (C)
-0.6
+0.5
+0.2
-0.3
+0.5
carbon source
L-Serine (C)
-0.3
-0.2
+0.1
+0.1
+0.9
carbon source
L-Glutamine (C)
-0.3
+0.5
+0.4
+0.1
-0.0
carbon source
L-Ornithine
-0.1
+0.2
+0.2
-0.2
+0.6
nitrogen source
Adenosine (N)
-0.3
+0.3
+0.2
+0.0
+0.8
carbon source
L-Citrulline
+0.2
-0.4
+0.5
-0.1
+0.8
pH
Minimal media pH9
+0.2
+0.4
+0.5
-0.2
+0.2
stress
Sisomicin 0.008 mg/ml
-0.1
+0.2
+0.4
+0.2
+0.4
carbon source
L-Ornithine
-0.0
+0.4
-0.0
+0.2
+0.7
survival
4C survival; 672 hrs
+0.3
-0.0
+0.5
-0.0
+0.6
denitrifying
Nitrate reduction, replicate C
+0.1
+0.3
+0.6
+0.0
+0.6
carbon source
acetate (C)
+0.3
+0.4
+0.4
+0.0
+1.1
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