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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_25160 and AO353_25165 overlap by 23 nucleotides
AO353_25165 and AO353_25170 are separated by 343 nucleotides
AO353_25170 and AO353_25175 are separated by 177 nucleotides
AO353_25175 and AO353_25180 are separated by 119 nucleotides
AO353_25160: AO353_25160 - ABC transporter substrate-binding protein, at 5,550,322 to 5,551,299
_25160
AO353_25165: AO353_25165 - ATP-NAD kinase, at 5,551,277 to 5,552,377
_25165
AO353_25170: AO353_25170 - Fis family transcriptional regulator, at 5,552,721 to 5,554,613
_25170
AO353_25175: AO353_25175 - AsnC family transcriptional regulator, at 5,554,791 to 5,555,291
_25175
AO353_25180: AO353_25180 - acetylpolyamine aminohydrolase, at 5,555,411 to 5,556,445
_25180
Group
Condition
AO353
_25160
AO353
_25165
AO353
_25170
AO353
_25175
AO353
_25180
carbon source
L-Ornithine
-0.4
-0.2
-0.2
-2.0
-0.1
carbon source
L-Ornithine
+0.0
-0.5
-0.1
-1.3
-0.2
stress
syringaldehyde 5 mM
-1.1
-0.2
-0.2
-0.2
-0.1
stress
Thallium(I) acetate 0.016 mg/ml
-0.5
-0.3
-0.2
-0.4
-0.2
pH
Minimal media pH9
+0.3
-1.0
+0.0
-0.6
-0.1
stress
A22 0.01 mg/ml
-0.8
-0.3
+0.0
-0.3
+0.1
carbon source
L-Isoleucine (C)
+0.1
-1.3
+0.2
+0.1
-0.4
carbon source
L-Proline (C)
-0.3
-0.7
-0.1
-0.4
+0.3
stress
Cisplatin 0.006 mg/ml
+0.2
-0.7
-0.4
+0.0
-0.2
carbon source
L-Alanine (C)
-0.2
-0.3
-0.1
+0.3
-0.8
carbon source
acetate (C)
-0.1
-0.5
+0.1
-0.8
+0.2
carbon source
L-Ornithine
+0.4
+0.4
-0.2
-1.3
-0.4
pH
Minimal media pH9
-0.4
+0.3
-0.5
-0.5
+0.1
anaerobic
N1B4wt with N2E3m denitrifying replicate C
-1.2
-0.3
+0.1
+0.2
+0.2
stress
Sisomicin 0.008 mg/ml
+0.4
-1.2
+0.2
-0.1
-0.2
pH
Minimal media pH7
-0.4
+0.4
-0.2
-0.4
-0.2
carbon source
L-Ornithine
-0.9
+0.3
-0.2
-0.6
+0.7
stress
Lomefloxacin 0.001 mM
-0.4
-0.3
-0.4
-0.0
+0.5
carbon source
L-Phenylalanine (C)
-0.2
-0.9
+0.1
+0.2
+0.1
stress
Cisplatin 0.006 mg/ml
+0.3
-0.7
-0.5
+0.0
+0.2
carbon source
L-Serine (C)
-0.5
-0.4
+0.2
+0.5
-0.3
stress
Tetracycline 0.0016 mg/ml
+0.3
-0.5
+0.0
-0.7
+0.4
motility
outer cut, LB soft agar motility assay
-0.4
+0.7
-0.3
+0.3
-0.4
stress
Cobalt chloride 0.16 mM
+0.6
+0.4
-0.2
+0.3
-0.3
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.0
+1.1
-0.3
-0.3
+0.6
carbon source
L-Citrulline
+0.5
-0.5
+0.1
+0.5
+0.7
carbon source
L-Citrulline
-0.0
+0.2
+0.0
+1.0
+0.6
carbon source
L-Citrulline
+0.1
+0.1
+0.1
+1.0
+0.7
carbon source
L-Citrulline (C)
-0.1
+0.1
+0.2
+1.5
+1.0
carbon source
L-Citrulline
+1.2
+0.5
-0.1
+0.7
+0.8
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