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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_25125 and AO353_25130 are separated by 27 nucleotides
AO353_25130 and AO353_25135 are separated by 29 nucleotides
AO353_25135 and AO353_25140 are separated by 75 nucleotides
AO353_25140 and AO353_25145 are separated by 223 nucleotides
AO353_25125: AO353_25125 - sugar ABC transporter permease, at 5,542,199 to 5,543,041
_25125
AO353_25130: AO353_25130 - ABC transporter, at 5,543,069 to 5,544,214
_25130
AO353_25135: AO353_25135 - glycosyl hydrolase family 32, at 5,544,244 to 5,545,713
_25135
AO353_25140: AO353_25140 - transcriptional regulator, at 5,545,789 to 5,546,781
_25140
AO353_25145: AO353_25145 - butanediol dehydrogenase, at 5,547,005 to 5,548,099
_25145
Group
Condition
AO353
_25125
AO353
_25130
AO353
_25135
AO353
_25140
AO353
_25145
carbon source
L-Citrulline
-0.4
-0.6
-0.1
+0.1
-0.3
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.4
+0.1
+0.1
-0.7
-0.3
carbon source
L-Citrulline
+0.1
-0.3
+0.0
-0.5
-0.4
carbon source
D-Glucose
-0.4
+0.1
-0.0
-0.3
-0.3
carbon source
L-Citrulline
+0.1
-0.4
-0.3
-0.3
-0.0
stress
copper (II) chloride 2.5 mM
-0.1
-0.3
+0.1
-0.4
-0.2
carbon source
L-Leucine (C)
-0.3
-0.3
+0.0
+0.1
-0.2
stress
Rifampicin 0.005 mg/ml
+0.2
-0.2
-0.1
-0.2
-0.3
carbon source
Cytidine (C)
-0.4
-0.3
-0.1
+0.0
+0.1
carbon source
L-Ornithine
-0.1
-0.3
-0.4
+0.1
+0.2
nitrogen source
Carnitine Hydrochloride (N)
-0.2
-0.3
-0.2
-0.1
+0.2
pH
Minimal media pH9
-0.3
-0.3
+0.2
-0.4
+0.1
motility
outer cut, LB soft agar motility assay
-0.2
-0.1
+0.2
-0.5
-0.0
carbon source
D-Glucose
-0.3
+0.2
-0.2
-0.2
+0.1
carbon source
L-Isoleucine (C)
+0.1
-0.5
-0.1
+0.1
+0.1
nitrogen source
L-Lysine (N)
-0.0
-0.3
-0.2
-0.1
+0.3
survival
4C survival; 360 hrs
-0.3
+0.0
+0.0
-0.3
+0.3
stress
Choline Lysine 12 mM
+0.2
-0.6
+0.1
+0.1
+0.1
stress
Cisplatin 0.006 mg/ml
+0.0
-0.1
-0.4
+0.0
+0.5
carbon source
acetate (C)
-0.2
-0.2
+0.4
-0.2
+0.3
stress
1-ethyl-3-methylimidazolium lysine 10.5 mM
+0.2
-0.3
-0.1
+0.1
+0.2
stress
Sisomicin 0.008 mg/ml
-0.2
-0.2
+0.2
-0.0
+0.3
motility
outer cut, LB soft agar motility assay
+0.3
+0.1
+0.1
-0.4
+0.1
carbon source
L-Citrulline (C)
-0.2
-0.2
+0.1
+0.3
+0.2
stress
Paraquat dichloride 0.032 mg/mL
+0.2
+0.2
+0.1
+0.1
-0.4
stress
Tetracycline 0.0016 mg/ml
+0.4
+0.2
+0.0
-0.0
-0.3
stress
Fusidic 0.125 mg/ml
-0.3
-0.0
+0.3
+0.0
+0.4
stress
Polymyxin B sulfate 4 mg/ml
+0.2
-0.3
+0.2
+0.1
+0.3
stress
perchlorate 75 mM
-0.3
+0.2
+0.0
+0.1
+0.4
stress
Doxycycline hyclate 0.0006 mg/ml
+0.5
+0.0
+0.4
+0.2
-0.0
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